Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq470 95.1 1e-14 >seq470 Length=704619 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||||||||||||| || || || || |||||||| ||||| || Sbjct 29800 TATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTCCCCCTCTTCT 29859 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||||||| | || ||||| || || || ||||| | || ||||| ||||| Sbjct 29860 CTGGTGTAGAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTT 29919 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 29920 ACGCCCTTTGCAGAGAGCTCTTTGG 29944 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| || ||||| ||||| || | ||||| || || || | Sbjct 29944 CCAAAGAGCTCTCTGCAAAGGGCGTAAAGATTTGGGATGCCAATGGGTCACGTGAGTTCC 29885 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| || | ||||||| | | || ||||| |||||||| || || || || |||| Sbjct 29884 TGGATAAACAGGGGTTCTACACCAGAGAAGAGGGGGACTTGGGGCCAGTTTATGGTTTCC 29825 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||||||||||| || || || Sbjct 29824 AGTGGAGACACTTTGGAGCAGAATA 29800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448070196289440