Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq470 109 4e-19 seq215 95.1 1e-14 >seq470 Length=704619 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || ||| Sbjct 26753 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 26812 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || || ||||||||||| || ||||| || || || || | Sbjct 26813 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAGA 26872 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | |||||||| || || | ||||| ||| Sbjct 26873 ACATAGAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATCAGA 26917 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || ||||||||||| || || || || |||| ||| |||||||| ||| | ||| Sbjct 29812 AAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTCCCCCTCTTCTCTGGTGTAGAAC 29871 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| || |||| || || | || || ||||| ||||| |||||||| ||||| | Sbjct 29872 CCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTTACGCCCTTTGCA 29931 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 29932 GAGAGCTCTTTGGCATTTGTAGAACC 29957 >seq215 Length=1253150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 |||||||||||||| |||| || | || ||| ||||||| | |||||| || || ||| Sbjct 111412 AGCTCCCTGCTGAGCACTATATTAATTCTATCTTTCAGAGGACGATTCTTCTCAGGAATG 111471 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| || ||| ||||||||||||| | |||| |||||| Sbjct 111472 GAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTCTTTACCT 111516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405993401189572