Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq518 120 3e-22 seq184 107 2e-18 >seq518 Length=643042 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || || || || ||||| ||||| | Sbjct 337074 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 337133 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 337134 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 337193 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 337194 CTGCAGCAAAGGCGAC 337209 Score = 98.7 bits (108), Expect = 8e-16 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 4926 CTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||||| || | |||||| ||||| || || |||||||||||||| || || | ||| || Sbjct 341118 CTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAGAAGGCGAGAACGTG 341177 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| || ||||||| ||| || | || || || |||||||| || | ||| || | ||| Sbjct 341178 AGAAATGAAGTACTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGATCCTTTGATAA 341237 Query 5045 ATCAAC 5050 |||||| Sbjct 341238 ATCAAC 341243 >seq184 Length=1437213 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || ||||| ||||| || || | ||| |||||||||||||| || || Sbjct 74007 TCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 73948 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 73947 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 73888 Query 4692 AC 4693 || Sbjct 73887 AC 73886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426871069512566