Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq470 114 1e-20 >seq470 Length=704619 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| || || ||||| ||||| || || || || |||| ||| Sbjct 29790 CATGTCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTC 29849 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||||| ||| | ||| ||| || |||| || || | || || ||||| || Sbjct 29850 CCCCTCTTCTCTGGTGTAGAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATC 29909 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| |||||||| ||||| | ||||||||||||| ||||| || || Sbjct 29910 CCAAATCTTTACGCCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 29957 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 26753 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 26812 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| || || || || || || |||| Sbjct 26813 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAGA 26872 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| || || | |||||| || Sbjct 26873 ACATAGAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATCAG 26916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369352725436562