Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq184 107 3e-18 seq1256 91.5 2e-13 seq518 89.7 7e-13 >seq184 Length=1437213 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| ||||| || ||||| || ||||||| || | ||| || Sbjct 74007 TCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 73948 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||| || ||||| ||||||||||| |||||||| || || |||||||| Sbjct 73947 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGC 73889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 75263 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 75204 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 75203 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 75169 >seq1256 Length=67100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 27015 TGAAACTCTCCCGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 27074 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || ||||| |||| || |||||||| |||||||||||||| || | | | | || Sbjct 27075 TCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGGCTG 27134 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 27135 TTTCTGACACCAT 27147 >seq518 Length=643042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 337088 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 337147 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || || || || |||||||| |||||||| || || ||||| ||| Sbjct 337148 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 337207 Query 48285 GTAAGTCTCTCTCC 48298 | |||||| || Sbjct 337208 ACCACTCTCTCACC 337221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694370943385280