Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq598 149 9e-31 seq44 143 4e-29 >seq598 Length=532752 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || |||||||| || ||||| ||| ||| |||||||| |||||||||| Sbjct 405778 ATGAGTCTTGTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAG 405837 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || || |||||||| || ||||| || || || |||||||| || || || Sbjct 405838 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGG 405897 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | |||||| Sbjct 405898 ACCAAGCCAAACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGA 405957 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || ||||| ||| Sbjct 405958 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTCGGTGGATACATTTCTCCATCAATTATC 406017 Query 9484 TG 9485 || Sbjct 406018 TG 406019 >seq44 Length=2569273 Score = 143 bits (158), Expect = 4e-29 Identities = 210/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||||||| ||| |||||| || || || || | | || Sbjct 1557540 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGCGACGCTG 1557599 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| |||| || ||||||| ||||| ||||||||||||||| |||||| Sbjct 1557600 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1557659 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| | | || || || ||||| |||||||| || | ||| | |||| Sbjct 1557660 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1557719 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || ||||| ||| ||| ||| |||| || || | || || || | || | ||||| Sbjct 1557720 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1557779 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| || || || || || || || |||||| ||||||| Sbjct 1557780 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 1557836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716569421150080