Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq448 145 2e-29 seq384 127 5e-24 seq648 95.1 3e-14 >seq448 Length=747048 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||| | |||||||| || ||| Sbjct 683887 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGCG 683944 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 683945 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAGC 684004 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | || || |||| || ||| Sbjct 684005 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 684064 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 684065 TCCAGAAGGAGTCCACCCTGCATCTCGT 684092 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || ||||| |||||| | |||||||| || ||| Sbjct 684357 CAGATCTTTGTGAAGACCCTGACTGGTAAAACCATCACCTTGGAGGTGGA--GCCCAGTG 684414 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 684415 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAGC 684474 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| ||||| || | || || |||| || ||| Sbjct 684475 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAACA 684534 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||||||||| Sbjct 684535 TCCAGAAGGAGTCCACCCTGCATCTTGT 684562 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || ||||| |||||| | |||||||| || ||| Sbjct 684585 CAGATCTTCGTGAAGACCTTGACTGGTAAAACCATCACCTTGGAGGTGGA--GCCCAGTG 684642 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||||||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 684643 ATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAGC 684702 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | || || |||| || ||| Sbjct 684703 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 684762 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 684763 TCCAGAAGGAGTCCACCCTGCACCTGGT 684790 >seq384 Length=852418 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| | || || || || ||||| || ||||| || || ||| Sbjct 86217 CAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGA--GCCCAGTG 86160 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||||||||| || ||||| || |||| Sbjct 86159 ACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 86100 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || |||| || ||| Sbjct 86099 AGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAACA 86040 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 86039 TCCAGAAAGAATCCACCCTGCACCTGGT 86012 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| |||||||| || || ||| Sbjct 86445 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGA--GCCCAGTG 86388 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| || ||||||||||| || ||||| || |||| Sbjct 86387 ACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 86328 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 86327 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 86268 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 86267 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGA 86227 Score = 123 bits (136), Expect = 6e-23 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || || || || ||| Sbjct 85989 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTTGA--GCCCAGTG 85932 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || ||||| || ||||||||||| || ||||| || |||| Sbjct 85931 ACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 85872 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 85871 AGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 85812 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 85811 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGA 85771 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || || Sbjct 86673 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGA--GCCTAGCG 86616 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||||||||| || ||||| || |||| Sbjct 86615 ACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 86556 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| ||||| || | || || | || || ||| Sbjct 86555 AGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 86496 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 86495 TCCAGAAAGAATCCACCCTGCACCTGGT 86468 >seq648 Length=473587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || ||||| |||||||| |||||||| || || | Sbjct 249781 CAGATCTTCGTGAAGACGCTCACGGGCAAAACCATCACCCTGGAGGTGGA--GCCCAATG 249724 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| ||||| |||||||| ||||| Sbjct 249723 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGG 249681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203202166908588