Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq448 149 6e-31 seq384 132 4e-26 seq648 82.4 7e-11 >seq448 Length=747048 Score = 149 bits (164), Expect = 6e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| ||| ||||||||| ||||| |||||||| ||||||||| |||| || Sbjct 684562 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCC 684503 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | ||| | || ||||||||| | Sbjct 684502 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGG 684443 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || |||||| Sbjct 684442 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTA 684383 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 684382 CCAGTCAGGGTCTTCACAAAGATCTGCATG 684353 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| ||| ||||||||| ||||| |||||||| ||||||||| | || || Sbjct 684092 ACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 684033 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | ||| | || ||||||||| | Sbjct 684032 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGG 683973 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | |||||||| | ||||||||||| || || || || Sbjct 683972 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTG 683913 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| ||||| ||||||||||| Sbjct 683912 CCGGTGAGGGTCTTCACGAAGATCTGCATGTT 683881 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| Sbjct 684799 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 684740 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||| | || ||| Sbjct 684739 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCC 684680 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | || || || | ||||||||||| || Sbjct 684679 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCCACCTCCAAGGTG 684620 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| |||| ||||| ||||| ||||||||| Sbjct 684619 ATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCATG 684581 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| Sbjct 684343 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 684284 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||| | || ||| Sbjct 684283 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCC 684224 Query 41765 TTGTCCATGATTTT 41778 |||||| ||| || Sbjct 684223 TTGTCCTGGATCTT 684210 >seq384 Length=852418 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| Sbjct 86231 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 86290 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| || || | |||| || || Sbjct 86291 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 86350 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| | | ||||| || | ||| ||||| | ||| Sbjct 86351 TTGT-CTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGT 86409 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 86410 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 86449 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| || ||||| ||||| ||||| || ||||||||| Sbjct 86459 AGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 86518 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || ||||| ||||| | ||| || || | |||| || || Sbjct 86519 CCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 86578 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 86579 TTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGAGTG 86638 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 86639 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 86679 >seq648 Length=473587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||||| ||| ||||| |||| || |||||||| || ||||| ||| Sbjct 249508 TTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATC 249567 Query 41735 AGGCGCTGTTGGTCCGCGGG 41754 |||||||| ||||| | ||| Sbjct 249568 AGGCGCTGCTGGTCGGGGGG 249587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462105775602400