Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq325 105 8e-18
seq797 96.9 4e-15
seq3828 84.2 3e-11
>seq325
Length=5823465
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||||||| || | ||| || ||||| || ||||| ||||| | || | || |
Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251
Query 24277 CAATAAGTCTTTCTCC 24292
| | | || ||||||
Sbjct 5212252 CTACTACTCGTTCTCC 5212267
>seq797
Length=179301
Score = 96.9 bits (106), Expect = 4e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088
||||||||||| ||||||||||||||||| || || | || || || |||| ||| ||
Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387
Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147
||||| || || || ||||| |||||| || |||||| | | || || | ||||| ||
Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328
Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174
|||| || |||| | | |||||||
Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGG 66301
>seq3828
Length=4044606
Score = 84.2 bits (92), Expect = 3e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578
|| |||||||| |||||||| ||||||||||||||||| |||| || || |||||
Sbjct 1128607 AAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAACGTGAGAGATAAAG 1128666
Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609
|||||||| |||| | | || || |||||||
Sbjct 1128667 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 1128697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593315375681280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |