Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3035 174 2e-38 seq791 113 5e-20 seq23416 86.0 8e-12 >seq3035 Length=7235724 Score = 174 bits (192), Expect = 2e-38 Identities = 206/277 (74%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||||| || | | |||||||||||||||||||| | |||||||||||| Sbjct 4244003 GGGCACGCCGTCAGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 4243944 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 4243943 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGCGGTCGTCGTGCGG 4243884 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| |||||| ||||||| |||||| || || || |||| | |||| ||| Sbjct 4243883 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGGGGGTGAGCGTCCTTCC--CGTTCACC 4243826 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| | || || || |||| | | ||||| |||||||| ||||||| | Sbjct 4243825 TCGCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCAGGACGAACGTGCTCC 4243766 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| |||||||||| | |||| || ||||||| Sbjct 4243765 AGCGAAAGCAAGATCTCCTCGTTCTTAGCATTTTCCT 4243729 >seq791 Length=1427658 Score = 113 bits (124), Expect = 5e-20 Identities = 178/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||||| ||||||| |||||||||||||||||||| | |||| ||| | Sbjct 1121244 GGGCACGCCGTCAGGTCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAGCGCCG 1121303 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAG 83237 || || ||||| | || |||| ||| || || ||| || ||||| | Sbjct 1121304 GACGGGGCTCCAGGTGAGGAAGCGGGGCTCGGCCATCAGGTGTG-TCCCCTCGTCAGCGG 1121362 Query 83238 GCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC-CTTGCACCGTTG 83293 | || |||||| |||| || ||| ||||||||| || |||| | ||| ||||| Sbjct 1121363 GGGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGTGTGTCCTGC-CCGTTC 1121418 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 |||| |||||||| ||| || | ||||| ||||| || |||||||| || | |||||| Sbjct 1121419 ACCTGGCACTTCTGGAACAGGGTGAAGTTGGGCTCAAACCCGTTCCCCGGCCTCACGTGC 1121478 Query 83354 TTCAGGG 83360 ||||||| Sbjct 1121479 TTCAGGG 1121485 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || |||||||| || ||||| || || || || || | || | ||| | Sbjct 1122314 CCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACGACGAGGCGGCGGGGG--TAG-C 1122370 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | ||| || | ||| | ||| ||||| |||| ||||||| | |||||||| || || | Sbjct 1122371 GTGTCTGGAGGTGGTTGAGCTGGGTGTAGTCCCTGACCGTGGTGCCTCAGAGCGAGGCCA 1122430 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 |||||||||| |||| || |||||||| Sbjct 1122431 CGTTCTCGATCAGCACCACGCGGCCCCG 1122458 >seq23416 Length=511 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || |||||||| || ||||| || || || || || | || | ||| | Sbjct 211 CCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACGACGAGGCGGCGGGGG--TAG-C 267 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | ||| || | ||| | ||| ||||| |||| ||||||| | |||||||| || || | Sbjct 268 GTGTCTGGAGGTGGTTGAGCTGGGTGTAGTCCCTGACCGTGGTGCCTCAGAGCGAGGCCA 327 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 |||||||||| |||| || |||||||| Sbjct 328 CGTTCTCGATCAGCACCACGCGGCCCCG 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608380261229440