Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq3035 174 2e-38
seq791 113 5e-20
seq23416 86.0 8e-12
>seq3035
Length=7235724
Score = 174 bits (192), Expect = 2e-38
Identities = 206/277 (74%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|||| |||||||| || | | |||||||||||||||||||| | ||||||||||||
Sbjct 4244003 GGGCACGCCGTCAGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 4243944
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
|| || |||||| ||| ||| |||| | ||| |||| | ||||||| ||
Sbjct 4243943 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGCGGTCGTCGTGCGG 4243884
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296
||||| |||||| ||||||| |||||| || || || |||| | |||| |||
Sbjct 4243883 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGGGGGTGAGCGTCCTTCC--CGTTCACC 4243826
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||| | || || || |||| | | ||||| |||||||| ||||||| |
Sbjct 4243825 TCGCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCAGGACGAACGTGCTCC 4243766
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|| ||| |||||||||| | |||| || |||||||
Sbjct 4243765 AGCGAAAGCAAGATCTCCTCGTTCTTAGCATTTTCCT 4243729
>seq791
Length=1427658
Score = 113 bits (124), Expect = 5e-20
Identities = 178/247 (72%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|||| |||||||| ||||||| |||||||||||||||||||| | |||| ||| |
Sbjct 1121244 GGGCACGCCGTCAGGTCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAGCGCCG 1121303
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAG 83237
|| || ||||| | || |||| ||| || || ||| || ||||| |
Sbjct 1121304 GACGGGGCTCCAGGTGAGGAAGCGGGGCTCGGCCATCAGGTGTG-TCCCCTCGTCAGCGG 1121362
Query 83238 GCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC-CTTGCACCGTTG 83293
| || |||||| |||| || ||| ||||||||| || |||| | ||| |||||
Sbjct 1121363 GGGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGTGTGTCCTGC-CCGTTC 1121418
Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353
|||| |||||||| ||| || | ||||| ||||| || |||||||| || | ||||||
Sbjct 1121419 ACCTGGCACTTCTGGAACAGGGTGAAGTTGGGCTCAAACCCGTTCCCCGGCCTCACGTGC 1121478
Query 83354 TTCAGGG 83360
|||||||
Sbjct 1121479 TTCAGGG 1121485
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||||| || |||||||| || ||||| || || || || || | || | ||| |
Sbjct 1122314 CCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACGACGAGGCGGCGGGGG--TAG-C 1122370
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| ||| || | ||| | ||| ||||| |||| ||||||| | |||||||| || || |
Sbjct 1122371 GTGTCTGGAGGTGGTTGAGCTGGGTGTAGTCCCTGACCGTGGTGCCTCAGAGCGAGGCCA 1122430
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538
|||||||||| |||| || ||||||||
Sbjct 1122431 CGTTCTCGATCAGCACCACGCGGCCCCG 1122458
>seq23416
Length=511
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||||| || |||||||| || ||||| || || || || || | || | ||| |
Sbjct 211 CCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACGACGAGGCGGCGGGGG--TAG-C 267
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| ||| || | ||| | ||| ||||| |||| ||||||| | |||||||| || || |
Sbjct 268 GTGTCTGGAGGTGGTTGAGCTGGGTGTAGTCCCTGACCGTGGTGCCTCAGAGCGAGGCCA 327
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538
|||||||||| |||| || ||||||||
Sbjct 328 CGTTCTCGATCAGCACCACGCGGCCCCG 355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608380261229440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |