Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq324 131 1e-25 seq1844 123 2e-23 >seq324 Length=3932543 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||| |||||||| || ||||| ||||| | | Sbjct 118981 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118922 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || |||||||| || ||| Sbjct 118921 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 118862 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||| || | ||| || |||| |||||| Sbjct 118861 ATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCAACC 118802 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || || ||||| || ||||| Sbjct 118801 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | ||||| | ||| | ||||| ||||| || ||||| ||||| Sbjct 119213 GTTACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 119154 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | | || |||||||| ||||| ||| | || || ||||||||||| Sbjct 119153 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 119094 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||| |||||||| |||||| || || | ||| || |||| |||||| Sbjct 119093 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTC 119034 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || |||||||| || ||||| Sbjct 119033 AACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 118983 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||| |||||||| || ||||| ||||| | | Sbjct 118753 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118694 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || | ||||||||||| ||| Sbjct 118693 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGA 118634 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| |||||| | Sbjct 118633 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACT 118574 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || ||||||||||| || | || || || || || |||||||| Sbjct 118573 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524 >seq1844 Length=2686333 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||| || | ||||| ||||| | ||||| | |||| Sbjct 2460054 AGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 2459995 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 2459994 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2459935 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2459934 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATGGTC 2459875 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 ||||| || | || || ||||| || ||||||||||| Sbjct 2459874 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTGAA 2459837 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| ||| | ||||| | ||| | ||||| ||||| || ||||| ||||| | | Sbjct 2460297 CCCCCTCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2460238 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| ||| ||||| ||| | || || ||||||||||| ||| Sbjct 2460237 AGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2460178 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| |||||| | | | || || | |||||| Sbjct 2460177 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2460118 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| || || || | || || ||||| || ||||| Sbjct 2460117 TCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| || ||||| || || ||||| ||||| | ||||| | | || Sbjct 2460510 AGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 2460451 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 2460450 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2460391 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | ||| ||||| Sbjct 2460390 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTT 2460331 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 2460330 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| | |||| Sbjct 2460738 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 2460679 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 2460678 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 2460619 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | ||| ||||| Sbjct 2460618 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTT 2460559 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || ||||| || ||||| Sbjct 2460558 TTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421977512998976