Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1844 163 3e-35 seq324 149 6e-31 seq325 102 8e-17 >seq1844 Length=2686333 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || |||||||||||| |||| || || ||| Sbjct 2460527 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460586 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| ||||| ||| | |||||| Sbjct 2460587 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 2460646 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 2460647 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2460706 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 2460707 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 2460754 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||||||||||||| |||| || || ||| Sbjct 2460299 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460358 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 2460359 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2460418 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||||| |||||||||| Sbjct 2460419 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 2460478 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || |||||||| ||| ||||| ||||||| || Sbjct 2460479 ATCCAGAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 2460525 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || ||||| ||||| ||| | || || || || Sbjct 2459840 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTTGAGGTTGAGCCC 2459899 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | || | || || | ||||| || ||||| ||| | || Sbjct 2459900 AGTGACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 2459958 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| |||| |||||||||| |||||| Sbjct 2459959 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTA 2460018 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| ||| | || || ||||| ||| ||||| ||||||| || Sbjct 2460019 CAACATCCCGAAAGAGTCAACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460069 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || |||||||||||| |||| || || ||| | Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | || | || || | || ||||| ||||| ||| | ||||| Sbjct 2460131 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCA 2460189 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||| |||| || | ||||||||| |||||||| Sbjct 2460190 GCAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAA 2460249 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| ||| ||||| |||| || || Sbjct 2460250 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGAGGGGG 2460297 >seq324 Length=3932543 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || ||| Sbjct 118983 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 119042 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 119043 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 119102 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 119103 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 119162 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 119163 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 119209 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| |||||||| | || || || || Sbjct 118524 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGAGCCC 118583 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| || || | ||||| |||||||| ||| | ||| Sbjct 118584 AGTGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 118643 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | | |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 118644 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTAC 118703 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || ||||| | ||| |||| |||| || ||| Sbjct 118704 AACATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 118754 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || ||| Sbjct 118755 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 118814 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | || ||||| ||||| ||| | || ||| Sbjct 118815 GACACCATCGAAAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCAGATCAG 118874 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 118875 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 118934 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| |||| |||| || ||| Sbjct 118935 ATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 118982 >seq325 Length=5823465 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||| || || || |||||||| || || || |||||||| || || | ||| Sbjct 5215154 GAGCCGCTGCTACGGGACAATCCCCGCCGCTTTGTCATCTTCCCCATCCAGTATCACGAC 5215095 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 5215094 ATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 5215041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514866687023360