Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1844 163 3e-35
seq324 149 6e-31
seq325 102 8e-17
>seq1844
Length=2686333
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || |||||||||||| |||| || || |||
Sbjct 2460527 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460586
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | |||||||| ||||| ||| | ||||||
Sbjct 2460587 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 2460646
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| |||| |||||||||| ||||||||||
Sbjct 2460647 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2460706
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| |||| || ||||| ||| ||||| ||||||| |||
Sbjct 2460707 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 2460754
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||||||||||||| |||| || || |||
Sbjct 2460299 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460358
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||| || ||||| ||| | || |||
Sbjct 2460359 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2460418
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| || | |||||||||| ||||||||||
Sbjct 2460419 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 2460478
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| | || |||||||| ||| ||||| ||||||| ||
Sbjct 2460479 ATCCAGAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 2460525
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || || || || || ||||| ||||| ||| | || || || ||
Sbjct 2459840 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTTGAGGTTGAGCCC 2459899
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | |||| | || | || || | ||||| || ||||| ||| | ||
Sbjct 2459900 AGTGACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 2459958
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | || |||| || ||||| |||||||| |||| |||||||||| ||||||
Sbjct 2459959 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTA 2460018
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| ||| | || || ||||| ||| ||||| ||||||| ||
Sbjct 2460019 CAACATCCCGAAAGAGTCAACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460069
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || |||||||||||| |||| || || ||| |
Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130
Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| | || | || || | || ||||| ||||| ||| | |||||
Sbjct 2460131 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCA 2460189
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| || ||||| ||| |||| || | ||||||||| ||||||||
Sbjct 2460190 GCAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAA 2460249
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || ||||| ||| ||||| |||| || ||
Sbjct 2460250 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGAGGGGG 2460297
>seq324
Length=3932543
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || ||||| ||||||||| | || || || |||
Sbjct 118983 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 119042
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | ||||| |||||||| ||| | ||||||
Sbjct 119043 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 119102
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| || | ||||||||| |||||||||
Sbjct 119103 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 119162
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| |||| || ||||| ||| ||||| ||||||| ||
Sbjct 119163 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 119209
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || || || ||||| |||||||| | || || || ||
Sbjct 118524 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGAGCCC 118583
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | ||| |||||| || || | ||||| |||||||| ||| | |||
Sbjct 118584 AGTGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 118643
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | | |||| || ||||| |||||||| || | |||||||| ||||||
Sbjct 118644 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTAC 118703
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||||| | || ||||| | ||| |||| |||| || |||
Sbjct 118704 AACATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 118754
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || ||||| ||||||||| | || || || |||
Sbjct 118755 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 118814
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||| | || || | || ||||| ||||| ||| | || |||
Sbjct 118815 GACACCATCGAAAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCAGATCAG 118874
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| || | ||||||||| |||||||||
Sbjct 118875 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 118934
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| | || ||||| | ||| |||| |||| || |||
Sbjct 118935 ATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGGC 118982
>seq325
Length=5823465
Score = 102 bits (112), Expect = 8e-17
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||||||||| || || || |||||||| || || || |||||||| || || | |||
Sbjct 5215154 GAGCCGCTGCTACGGGACAATCCCCGCCGCTTTGTCATCTTCCCCATCCAGTATCACGAC 5215095
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| |||||||| ||||| ||||| || |||||||| | |||||||||
Sbjct 5215094 ATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 5215041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514866687023360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |