Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq618 441 5e-119 seq766 95.1 8e-15 >seq618 Length=1768260 Score = 441 bits (488), Expect = 5e-119 Identities = 744/1068 (70%), Gaps = 28/1068 (3%) Strand=Plus/Minus Query 107569 AGGCCCTCCTAGACAACCTGGAAGT---GAAGAAAAAGCGGTCGCCTCTCACTGGCACCT 107625 |||||| || ||||||||| || |||||| ||| | || ||| ||||| Sbjct 1440591 AGGCCCAGCTCAGCAACCTGGAGGTTGGGAAGAAGAAGG-------TTTCCCTGACACCT 1440539 Query 107626 AT----TACCTCAACATAACCAGAGACTGTGAGCG-CTTCAAGG---CCCAAAGGAAGTT 107677 | ||||| ||||| || | ||||| ||| |||||||| ||| ||| ||| Sbjct 1440538 ACAGACTACCTGAACATGACGAAGGACTGC-AGCAACTTCAAGGAGACCC---GGAGGTT 1440483 Query 107678 CATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGT 107737 ||| |||||||||||||| | |||||| ||| |||||||| |||||||| ||||| | Sbjct 1440482 CATCCAGTTCCCACTGAGCCAGGAAGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCAT 1440423 Query 107738 CCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACAT 107797 ||| | |||||||| | || || || || ||||| || | || |||| |||||||| Sbjct 1440422 CCACAACAAGATTGAGATGTTCGAGCGTCTCCTGCGGTCCATCTACACCCCACAGAACAT 1440363 Query 107798 ATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCAT 107857 |||||||||||| | || ||||| || || ||| | |||| || | |||||| Sbjct 1440362 CTACTGTGTCCACATTGACAACAAGTCTCCGTCTACCTTCCAGAAGGCTGTGAGGGCCAT 1440303 Query 107858 TATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTC 107917 | | |||||||||||||||| || ||||||| ||| ||||| |||||||| Sbjct 1440302 TGTGGCCTGCTTCCCCAATGTTTTTGTGGCCAGCCGCCTGGAAAAAGTGGTCTATGCCTC 1440243 Query 107918 CTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC 107977 ||||||| || ||||||||||||| ||||| ||| | ||| || | |||||| | ||||| Sbjct 1440242 CTGGTCCCGACTGCAAGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCC 1440183 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||| ||| | || || || || || || || |||||||| ||||||||||| || || Sbjct 1440182 GTGGCGCTACATCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGATAT 1440123 Query 108038 GGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGA 108097 |||| ||||| ||| | | |||| |||||||||||||||| ||| || || | Sbjct 1440122 TGTCCGTGCCCTGAAGCTCCTACAGGGCCAGAACAGTATGGAGTCAGAGAAGCCCTCAGC 1440063 Query 108098 GTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG 108157 |||| | | |||||| | |||| | || ||| || | | | | | ||| Sbjct 1440062 CATCAAACAGGAGCGCTGGCACTACCATCACGAAGTGGGGGAGTCTATCT-CACGGACAG 1440004 Query 108158 CAAGA-TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 | | | ||| || || || | || | |||||||||||||| || || || | | Sbjct 1440003 CCACAGAGAAACTGCCACCACCCCACAACTCTCCCATGTTCACAGGCAACGCGTACATCG 1439944 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTG 108276 ||| ||| || |||||||| || || |||| || ||||| | || | ||| Sbjct 1439943 TGGTCTCACGGGCCTTTGTGCAGCACATCTTTGAGAACCCCACGGTGCAGCAGTTCCTTG 1439884 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGC 108334 | |||| ||| |||||||| ||||||||||| ||| ||||||||||||| | || ||| Sbjct 1439883 AGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC 1439824 Query 108335 TCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGC 108394 | ||| |||| || | | || | ||||| || |||| ||||||| ||| Sbjct 1439823 CCGGTG--TGCCAGGTGCCATGCCCCAGAATGACAAGTTCCATCTCTCGGACATGATTGC 1439766 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 | | || | | ||||||||||||||| ||||| || ||||| || ||||| || Sbjct 1439765 CTTGCCCCGTGTGGTCAAGTGGCAGTACATGGAGGGTGACACCAGCAAAGGTGCGCCCTA 1439706 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 | |||||| | || || | | |||| ||||||| ||||||| || || || Sbjct 1439705 CCCGCCCTGCACCGGCCAGCACCAGCGGGCGGTCTGCATCTACGGGGTGGGTGATGTGCC 1439646 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAA 108574 |||| | |||||| | || || |||||||| |||||||||||||| |||||| ||| Sbjct 1439645 CTGGCTGCTCCAGCAGCACCAACTCTTGGCCAACAAGTTTGACCCCTTGGTGGACGATGC 1439586 Query 108575 CGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || | | ||||| | || ||| |||| || || | |||| |||| || Sbjct 1439585 CGCCATACAGTGTCTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 1439538 >seq766 Length=6580670 Score = 95.1 bits (104), Expect = 8e-15 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| |||||||| || || |||| ||||| || ||||| | Sbjct 3451361 TTGAGTGGGCAAAAGACACTTATAGCCCAGATGAGTACCTATGGGCAACAATTCAGAGAA 3451420 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | ||||||| | ||| || || | |||||| || | || |||||| Sbjct 3451421 -TCCCTGAAGTGCCTGGAGCAGTTTCTTCTAGTGAG---AAGTATGACGTTTCTGACATG 3451476 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | || || | ||||||||||||||| || || ||||| | || || Sbjct 3451477 AATGCACTGGCTAGATTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCTAAAGGTGCA 3451536 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | ||| | | | || ||| || | || ||| Sbjct 3451537 CCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTTTGTGTTTTTGGAGTAGGAGAC 3451596 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 3451597 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 3451644 Score = 86.0 bits (94), Expect = 4e-12 Identities = 225/340 (66%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || || || ||||| ||| || || ||||| ||||| || ||||| || | || ||| Sbjct 3450775 CTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATT 3450834 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | | || | || || || | | |||||||||||||| | ||||| | || Sbjct 3450835 GAGATGCTCGATAGACTTCTAAGATCAATATATGCCCCTCAGAATTTTTACTGCATTCAT 3450894 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 || || ||||| |||||| |||| | || || || | || | || || || Sbjct 3450895 GTTGACAAAAAGTCTCCAGAGTCTTTTCTTGCTGCTGTGAAAGGAATAGTCTCATGTTTT 3450954 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||||||| || ||||| |||| | || || ||||| || ||| ||| ||| Sbjct 3450955 GATAATGTCTTTATTTCCAGTCAGTTAGAGAGTGTTGTGTATGCTTCTTGGAGCAGGGTG 3451014 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACT 107988 || || || | || |||||| |||| | || |||| ||| | | ||||| ||| Sbjct 3451015 CAGGCAGATATTAATTGTATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAATACC 3451072 Query 107989 TACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || | || || || | |||||||| ||||||||||| Sbjct 3451073 TAATCAACCTTTGTGGCATGGACTTCCCTATAAAGACCAA 3451112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348036471624864