Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq324 98.7 8e-16 seq1844 96.9 3e-15 >seq324 Length=3932543 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 118966 AGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 118907 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| ||| | |||||| ||||| Sbjct 118906 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTATCC 118847 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || ||||| | | | | ||||||| |||||| || | ||||||| | Sbjct 118846 TGGATCT-TGGCTTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 118788 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 118787 CTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | || || | |||||||| || Sbjct 119185 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 119126 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||| ||||| || || | Sbjct 119125 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTG 119066 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | | | ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 119065 GCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCTGTC 119006 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||| Sbjct 119005 AAGGTCTTGACAAAGATCTGCAT 118983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 118738 AGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 118679 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| | || || || || ||| | ||| ||||| || Sbjct 118678 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 118619 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | | ||||||| |||||| ||| | |||||| | Sbjct 118618 TGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATGGTC 118559 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || || || |||||||| Sbjct 118558 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524 >seq1844 Length=2686333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| ||||| || ||||||||||||| | || | |||||||| || Sbjct 2460501 TGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGC 2460442 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||||||||| || || | Sbjct 2460441 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2460382 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| || | ||||||| ||||||| ||| Sbjct 2460381 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGCCAGTC 2460322 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 2460321 AGGGTCTTCACAAAGATCTGCAT 2460299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| ||||| | ||||||||||||| | || | ||||||| || Sbjct 2460045 TGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGC 2459986 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || || | | Sbjct 2459985 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCT-T 2459927 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | ||| ||||||| |||||| |||| ||| ||| | ||||| || Sbjct 2459926 GGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATGGTCTTGCCAGT 2459867 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || || || ||||| || |||||||| || Sbjct 2459866 CAGGGTCTTCACAAAGATCTGCATTTTGAA 2459837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | || || | ||||||||| || Sbjct 2460273 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAACTGC 2460214 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | |||||| ||||| || | | Sbjct 2460213 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCT-T 2460155 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | ||| ||||| | |||||| || | ||||||| |||| || || Sbjct 2460154 GGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTTTTCCCAGT 2460095 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||| Sbjct 2460094 CAGGGTCTTCACAAAGATCTGCAT 2460071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379090941514320