Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq797 118 9e-22
seq324 113 4e-20
seq1844 102 7e-17
>seq797
Length=179301
Score = 118 bits (130), Expect = 9e-22
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| |||||||| || ||||| || || || ||||| | ||| || |
Sbjct 68291 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGG 68232
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||||| || ||||||||| || || ||||| |||||||||||||||||||| || |
Sbjct 68231 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAATCCTTGTAGAGCATGTAGGGAG 68172
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGAT 23193
| || ||||| ||| || ||||||||
Sbjct 68171 TCCCAGTCTCTGTCTGGGATTCGATGAT 68144
>seq324
Length=3932543
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| |||||||||| || |||||| | || ||||| ||
Sbjct 118982 CATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 119041
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||||| ||||| | || ||||||||| ||| | || ||||||||
Sbjct 119042 TGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 119101
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| || || || || ||
Sbjct 119102 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 119161
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || ||||| || || ||||| || || | |||||||| ||||
Sbjct 119162 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGTA 119211
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| ||||||||||| || ||||| | || ||||| ||
Sbjct 118524 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGAGCCC 118583
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||||| ||||| | || ||||||||| ||| | || ||||||
Sbjct 118584 AGTGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCCGAC 118643
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | | || || |||||||| ||| ||||||| | | | || || || ||
Sbjct 118644 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTA 118702
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || || ||||| || |||| || | ||||| || ||
Sbjct 118703 CAACATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGG 118753
>seq1844
Length=2686333
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| || ||||| |||||| |||| ||||| || |
Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || ||| | || ||| || |||||| | || || ||||||
Sbjct 2460131 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 2460190
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || |||||||| ||||||||||| || || || || |||
Sbjct 2460191 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2460250
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || ||||| || || ||||| || || | ||||| || ||||
Sbjct 2460251 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGAGGGGGTA 2460299
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| |||||||| |||||| |||| ||||| ||
Sbjct 2460299 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460358
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||||||| | || || || |||
Sbjct 2460359 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2460418
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || |||||||| ||| ||||||| || | ||| || |||
Sbjct 2460419 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 2460478
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || || || ||||| || || | |||||||| ||
Sbjct 2460479 ATCCAGAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 2460525
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || || || ||||| ||||| ||||| || || ||| | || |||||
Sbjct 2459838 TCAAA-ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTTGAGGTTGAG 2459896
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| | || | || ||| | || ||||||||||||| | || ||
Sbjct 2459897 CCCAGTGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 2459956
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||| | || || || |||||||| ||| |||||||| || | |||
Sbjct 2459957 GACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGAC 2460016
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| | ||||| || || || ||||| || || | |||||||| ||
Sbjct 2460017 TACAACATCCCGAAAGAGTCAACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445461406629120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |