Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3828 111 2e-19 seq325 102 1e-16 seq797 96.9 4e-15 seq54736 89.7 6e-13 >seq3828 Length=4044606 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||| | ||| || || || || |||||||| ||||| || |||||||||| Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 1121824 CAACCACTCTCTCACC 1121839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| |||||||||||||||||||||||||| |||| || || ||||| Sbjct 1128607 AAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAACGTGAGAGATAAAG 1128666 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 |||||||| |||| | | || || ||||||| Sbjct 1128667 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 1128697 >seq325 Length=5823465 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 33724 C 33724 | Sbjct 5212252 C 5212252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACT 33284 |||| ||||||| || |||| | | ||| |||||| |||| ||||| ||| Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886 Query 33285 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33344 ||||| | || |||||||| || | ||| || || ||||| ||||| ||||||| || Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946 Query 33345 ATATTTTCCATGAAATCAAACGGATT 33370 || ||||||||||| ||||| ||||| Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||||||||| ||||||||||||||||| || || | || || || || | ||| || Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || || || ||||| |||||| || |||||| | | || || | ||||| || Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| || ||||| | | ||||||| Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGG 66301 >seq54736 Length=7304399 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | ||||| | ||||| || || | |||||||| |||||||||| Sbjct 1997663 TTTCTATGATGTGTCCATCGTCCTGCAAGCCTTTATTCTAACTACTGCTGTGTTTCTTGG 1997604 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||| ||| ||| | || ||||||||||| ||||| ||| ||| | |||| Sbjct 1997603 ACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 1997550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629386678798080