Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq54736 116 5e-21 seq325 102 1e-16 seq797 96.9 5e-15 >seq54736 Length=7304399 Score = 116 bits (128), Expect = 5e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | |||||||||||||| ||||| Sbjct 1997550 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAGTCCAAGA 1997609 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 ||||| |||||||| || || || ||||||| |||| ||||||||||||| Sbjct 1997610 AACACAGCAGTAGTTAGAATAAAGGCTTGCAGGACGATGGACACATCATAGAAA 1997663 >seq325 Length=5823465 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 36300 C 36300 | Sbjct 5212252 C 5212252 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 35805 TGTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACT 35860 |||| ||||||| || |||| || | ||| |||||| |||| ||||| ||| Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886 Query 35861 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGAT 35920 ||||| | || |||||||| || | ||| || || ||||| ||||| ||||| | || Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946 Query 35921 ATATTTTCCATGAAATCGAATGGATT 35946 || ||||||||||| || || ||||| Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||||||||| ||||||||||||||||| || || | || | || |||| ||| || Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| || || || ||||| |||||| || |||||| | | || || | ||||| || Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| || ||||| | | ||||||| Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGG 66301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657722478170240