Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3828 120 4e-22 seq325 114 2e-20 seq797 105 1e-17 >seq3828 Length=4044606 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||||||||| | ||||| || || || |||||||| ||||| || || ||||||| Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 1121824 CAACCACTCTCTCACC 1121839 >seq325 Length=5823465 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || ||||| Sbjct 5212252 CTACTACTCGTTCTCC 5212267 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 49607 TGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTT----CTTGAGACATAACT 49662 |||| ||||||| || |||| || | ||| || ||| |||| ||||| ||| Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886 Query 49663 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 49722 ||||| | || |||||||| || | ||| || || ||||| ||||| ||||||| || Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946 Query 49723 ATATTTTCCATGAAATCAAACGGATT 49748 || ||||||||||| ||||| ||||| Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 105 bits (116), Expect = 1e-17 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 79997 |||||||||||| ||||||||||||||||| || || | || || || |||| ||| || Sbjct 66447 TACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTG 66388 Query 79998 CTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 80056 |||||| || || || ||||| |||||| || |||||| | | || || | ||||| | Sbjct 66387 CTCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGG 66329 Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTC 80086 | |||| || ||||| | | |||| |||| Sbjct 66328 GCTCCAGATAGATGGCAAAAGCTCCAGGTC 66299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717777360487040