Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3828 120 4e-22 seq325 111 2e-19 seq797 102 1e-16 >seq3828 Length=4044606 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||||||||||| ||||| || || || |||||||| ||||| || || ||||||| Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 1121824 CAACCACTCTCTCACC 1121839 >seq325 Length=5823465 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 42207 C 42207 | Sbjct 5212252 C 5212252 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||| | || || || || | |||||| |||||||||||||| |||||| Sbjct 5214162 TCTTTAGGATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 5214221 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 || ||||| ||||| || || |||||||| | || || || || ||||||||| || | Sbjct 5214222 TCCATGGCAATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTA 5214281 Query 42437 AATCGTTC 42444 ||||| || Sbjct 5214282 AATCGCTC 5214289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACT 41767 |||| ||||||| || |||| | | ||| |||||| |||| ||||| ||| Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886 Query 41768 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGAT 41827 ||||| | || |||||||| || | ||| || || ||||| || || ||||||| || Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946 Query 41828 ATATTTTCCATGAAATCAAACGGATT 41853 || ||||||||||| ||||| ||||| Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||||||||||| ||||||||||||||||| || || | || || || |||| ||| || Sbjct 66447 TACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTG 66388 Query 72081 CTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 |||||| || || || ||||| |||||| || |||||| | | || || | ||||| | Sbjct 66387 CTCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGG 66329 Query 72140 GTTCCAAGTATATGGCCATAACTCCCGG 72167 | |||| || ||||| | | |||| || Sbjct 66328 GCTCCAGATAGATGGCAAAAGCTCCAGG 66301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670680006559360