Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3828 120 4e-22
seq325 111 2e-19
seq797 102 1e-16
>seq3828
Length=4044606
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| | ||||||||||| ||||| || || || |||||||| ||||| || || |||||||
Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 1121824 CAACCACTCTCTCACC 1121839
>seq325
Length=5823465
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | ||| || ||||| || ||||| ||||| | || | || |
Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251
Query 42207 C 42207
|
Sbjct 5212252 C 5212252
Score = 100 bits (110), Expect = 4e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||| | || || || || | |||||| |||||||||||||| ||||||
Sbjct 5214162 TCTTTAGGATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 5214221
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436
|| ||||| ||||| || || |||||||| | || || || || ||||||||| || |
Sbjct 5214222 TCCATGGCAATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTA 5214281
Query 42437 AATCGTTC 42444
||||| ||
Sbjct 5214282 AATCGCTC 5214289
Score = 84.2 bits (92), Expect = 3e-11
Identities = 107/146 (73%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACT 41767
|||| ||||||| || |||| | | ||| |||||| |||| ||||| |||
Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886
Query 41768 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGAT 41827
||||| | || |||||||| || | ||| || || ||||| || || ||||||| ||
Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946
Query 41828 ATATTTTCCATGAAATCAAACGGATT 41853
|| ||||||||||| ||||| |||||
Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972
>seq797
Length=179301
Score = 102 bits (112), Expect = 1e-16
Identities = 113/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080
|||||||||||| ||||||||||||||||| || || | || || || |||| ||| ||
Sbjct 66447 TACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTG 66388
Query 72081 CTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139
|||||| || || || ||||| |||||| || |||||| | | || || | ||||| |
Sbjct 66387 CTCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGG 66329
Query 72140 GTTCCAAGTATATGGCCATAACTCCCGG 72167
| |||| || ||||| | | |||| ||
Sbjct 66328 GCTCCAGATAGATGGCAAAAGCTCCAGG 66301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670680006559360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |