Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1981 168 2e-36 seq1844 167 5e-36 seq324 158 3e-33 seq3828 116 9e-21 seq325 107 4e-18 seq356 95.1 3e-14 seq3230 87.8 4e-12 seq1420 84.2 5e-11 >seq1981 Length=6480852 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 1471855 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1471796 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 1471795 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1471736 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1471735 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1471693 >seq1844 Length=2686333 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || |||||||| || | || || ||||| | || ||||| ||||| || || |||||| Sbjct 2460300 ATACCCCCTCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2460241 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | || || |||||||| || |||||||| || ||||| Sbjct 2460240 GACAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 2460181 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| ||||| || || || | ||| ||||| || || Sbjct 2460180 GGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCA 2460121 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || || || ||||| |||||||| Sbjct 2460120 ACCTCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || |||||| | || || ||||| Sbjct 2460072 ATCCCACCCCTCAGGCGCAGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCG 2460013 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || |||||||| || |||||||| || ||||| Sbjct 2460012 GAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 2459953 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||| || || || || Sbjct 2459952 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCA 2459893 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| || || || ||||| |||||||||||| Sbjct 2459892 ACCTCAAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 2459839 >seq324 Length=3932543 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | ||||| || ||||| || || |||||| Sbjct 118984 ATGCCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCA 118925 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 118924 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 118865 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| ||||| |||||||| | ||| || || || || Sbjct 118864 GGAATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCA 118805 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | || || ||||| |||||||| Sbjct 118804 ACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | ||||| || ||||| || || |||||| Sbjct 118756 ATGCCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCA 118697 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || | |||||| || || || Sbjct 118696 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGG 118637 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || |||||||| | ||| || || || || Sbjct 118636 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCA 118577 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| || || || || || || || ||||||||||| Sbjct 118576 ACTTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524 >seq3828 Length=4044606 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| ||||| ||||| || ||||| || || || ||||| ||||| |||||| Sbjct 1121827 GTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCAGGTTCCTTTGCTGCTATATTTTGG 1121768 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| |||||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 1121767 TTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1121708 Query 269258 GA 269259 || Sbjct 1121707 GA 1121706 >seq325 Length=5823465 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 5212267 GGAGAACGAGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 5212208 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 5212207 TCAATTTTTTGGCTGAAGAAAAGAGGATTGATGCCTGGACTGACTTTTTCTAATGAACTC 5212148 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 5212147 ATCAGTAGAGATGA 5212134 >seq356 Length=129114 Score = 95.1 bits (104), Expect = 3e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| ||||||| | |||||||| |||||| | ||| |||||| | ||||| |||||| Sbjct 39550 CAGTGAATATTCCACACGAATTACACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 39491 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTTTCCACGCGA 174192 |||||||||||| ||||||| |||| | || |||| | | || ||||| || Sbjct 39490 TTTCAGCTGTTTGCCATTCCAAGTTTCTGTTTTCCCAGAAGACAACGACTCCCCACG-GA 39432 Query 174193 TG-AGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTT 174251 | || |||||| | | | |||| || || || | | | ||| |||| |||| ||| Sbjct 39431 GGTTGGCAATAAGCTGTTTCACTTCTTTCATTTTCCCTTTGGCATAGAATGCCTGTGTTT 39372 Query 174252 GGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTA 174311 |||| || | || |||| || ||| || || ||| ||||| || |||| | Sbjct 39371 GGTAAATGGTTGCCTTTGGCACCACCATACGGGAAGAGCAATTCTCAATCTCAGCAAAGA 39312 Query 174312 TCCTAACGTATTCACC 174327 || || ||||||| Sbjct 39311 TCTGAATTGATTCACC 39296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| ||||||| | |||||||| |||||| | ||| |||||| | ||||| |||||| Sbjct 73877 CAGTGAATATTCCACACGAATTACACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 73936 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTTTCCACGCGA 174192 |||||||||||| ||||||| |||| | || |||| | | || ||||| || Sbjct 73937 TTTCAGCTGTTTGCCATTCCAAGTTTCTGTTTTCCCAGAAGACAACGACTCCCCACG-GA 73995 Query 174193 TG-AGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTT 174251 | || |||||| | | | |||| || || || | | | ||| |||| |||| ||| Sbjct 73996 GGTTGGCAATAAGCTGTTTCACTTCTTTCATTTTCCCTTTGGCATAGAATGCCTGTGTTT 74055 Query 174252 GGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTA 174311 |||| || | || |||| || ||| || || ||| ||||| || |||| | Sbjct 74056 GGTAAATGGTTGCCTTTGGCACCACCATACGGGAAGAGCAATTCTCAATCTCAGCAAAGA 74115 Query 174312 TCCTAACGTATTCACC 174327 || || ||||||| Sbjct 74116 TCTGAATTGATTCACC 74131 >seq3230 Length=1922383 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||||||||| ||||| ||||| ||||| || | ||||||| | ||||| ||||| Sbjct 1125403 CCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTATCGTTGGGTTCCACCTCC 1125462 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || || || || || || || |||||||| ||| Sbjct 1125463 AAGGTGATGGTTTTTCCCGTCAGCGTCTTCACGAAGATCTGCATCTTG 1125510 >seq1420 Length=3350139 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || |||||||| || || | || |||||||| || || |||||||||| Sbjct 2047922 CTTTTTGAATGTTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTCCCAGCAAAAA 2047981 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | |||| ||| ||||||||||| || ||| Sbjct 2047982 TCAGCCGCTGCTGATCAGGAGGAATGCCT 2048010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150590918545088