Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq3929 147 3e-30
seq1197 107 3e-18
>seq3929
Length=4502058
Score = 147 bits (162), Expect = 3e-30
Identities = 226/320 (71%), Gaps = 2/320 (1%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||| | | |||
Sbjct 981976 GGAAGGCAGTGAAAGGACAGCCTTTAACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 981917
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| ||| |||| ||||| | ||| || || |||||||| |||||||| | || |
Sbjct 981916 TGTTGATTATCTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGTG 981857
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || ||||| || || ||||| || || | ||| | ||
Sbjct 981856 AGCAGATTGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 981797
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || |||||||| || || |||||||| || | || || | |||| |||||
Sbjct 981796 TTTCTCCAAAGATGGCACCTGGTCGTGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 981737
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || |||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 981736 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTGA 981677
Query 8978 TTATTAATAAAAATAAAATG 8997
||| | || || | ||||||
Sbjct 981676 TTAGTGATGAATA-AAAATG 981658
Score = 143 bits (158), Expect = 4e-29
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||||||| || || ||||| || || ||| ||| |||||||| || |||||||
Sbjct 980009 ATGAGTCGAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 979950
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| ||||| || ||||| |||||||| | || ||
Sbjct 979949 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 979890
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || || |||| | ||| | ||| ||||| | |||||
Sbjct 979889 ACCAACCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGCACATGAGGAGGG 979830
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 979829 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 979770
Query 9862 TG 9863
||
Sbjct 979769 TG 979768
>seq1197
Length=5421966
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| | || || | |||| || ||||| ||||||||||| || | ||||
Sbjct 4397953 TCTTAACTATCTCGAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAATACTCTGGGG 4398012
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| ||| | | || || ||||||||||| ||||| || | ||| | ||||
Sbjct 4398013 AGCAGATAGGGTTTCCAAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGC 4398072
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | ||||| |||| || || | || || || | ||| |||||||
Sbjct 4398073 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 4398132
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 4398133 GAGCATCAATGTCTCCATACAG 4398154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708040027331840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |