Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3929 147 3e-30 seq1197 107 3e-18 >seq3929 Length=4502058 Score = 147 bits (162), Expect = 3e-30 Identities = 226/320 (71%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 981976 GGAAGGCAGTGAAAGGACAGCCTTTAACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 981917 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | ||| || || |||||||| |||||||| | || | Sbjct 981916 TGTTGATTATCTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGTG 981857 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 981856 AGCAGATTGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 981797 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||||| || || |||||||| || | || || | |||| ||||| Sbjct 981796 TTTCTCCAAAGATGGCACCTGGTCGTGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 981737 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 981736 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTGA 981677 Query 8978 TTATTAATAAAAATAAAATG 8997 ||| | || || | |||||| Sbjct 981676 TTAGTGATGAATA-AAAATG 981658 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||||||| || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 980009 ATGAGTCGAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 979950 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 979949 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 979890 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| ||||| | ||||| Sbjct 979889 ACCAACCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGCACATGAGGAGGG 979830 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 979829 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 979770 Query 9862 TG 9863 || Sbjct 979769 TG 979768 >seq1197 Length=5421966 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| | || || | |||| || ||||| ||||||||||| || | |||| Sbjct 4397953 TCTTAACTATCTCGAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAATACTCTGGGG 4398012 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| ||| | | || || ||||||||||| ||||| || | ||| | |||| Sbjct 4398013 AGCAGATAGGGTTTCCAAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGC 4398072 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | ||| ||||||| Sbjct 4398073 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 4398132 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 4398133 GAGCATCAATGTCTCCATACAG 4398154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708040027331840