Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq324 134 1e-26 seq1844 104 2e-17 >seq324 Length=3932543 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||||||||| |||||| ||||| || | ||| || || | Sbjct 118981 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118922 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| | || ||||||||||| ||| Sbjct 118921 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 118862 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || || ||||| ||| |||||| | | || || Sbjct 118861 ATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCAACC 118802 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||||||||||||||||| Sbjct 118801 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATGC 118753 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||||||||| |||||| ||||| || | ||| || || | Sbjct 118753 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118694 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| || || ||||| || || ||| Sbjct 118693 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGA 118634 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| ||| |||||| | | || || Sbjct 118633 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACT 118574 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 118573 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 118527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | || |||||||| || | ||| || || | Sbjct 119209 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 119150 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| | || ||||| || || ||| Sbjct 119149 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 119090 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| ||| |||||| | | || || Sbjct 119089 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 119030 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || || |||||||||||||||| Sbjct 119029 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATGC 118981 >seq1844 Length=2686333 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | |||| || || || || || | ||| || ||| Sbjct 2460525 CCACCCCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAG 2460466 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| | || |||||||| || ||| Sbjct 2460465 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2460406 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || | | |||||| | | || || Sbjct 2460405 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 2460346 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| || || ||||||||||||||||| Sbjct 2460345 TCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | || |||||||| || | ||| || ||| Sbjct 2460753 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 2460694 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| | || ||||| || || ||| Sbjct 2460693 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2460634 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||| || | | |||||| | | || || Sbjct 2460633 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 2460574 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| || || ||||||||||||||||| Sbjct 2460573 TCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||| | || | || |||||||| || | ||| || || | Sbjct 2460297 CCCCCTCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2460238 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||| ||| || || ||||||| | || ||||| || || ||| Sbjct 2460237 AGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2460178 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || || || ||| | | ||||| | | || || Sbjct 2460177 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2460118 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| || || ||||||||||||||||| Sbjct 2460117 TCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || ||||| ||||| ||| Sbjct 2459997 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2459938 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || ||| | | |||||| | | || || |||| || ||| Sbjct 2459937 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATG 2459878 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||||||||| Sbjct 2459877 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2459843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447984479160960