Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq332 149 1e-31 seq2367 122 1e-23 >seq332 Length=2130183 Score = 149 bits (164), Expect = 1e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || |||||||| || ||||||||||| || || Sbjct 320238 CGCCAAGCGTCATCGTAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 320297 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || ||||||||||| || |||||||| |||| || ||| |||| || |||| Sbjct 320298 CCGTCGCCTTGCTCGTCGTGGCGGTGTCAAGCGCATCTCGGGGTTGATCTACGAGGAGAC 320357 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||| | ||| ||| |||| |||||| | ||| ||||| Sbjct 320358 GCGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATCCGCGATGCTGTGACCTACACCGA 320417 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || |||||||| | || || || |||| || || || Sbjct 320418 GCACGCCAAGAGGAAGACGGTGACAGCCATGGATGTGGTGTACGCTCTGAAGCGGCAGGG 320477 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || |||||||| || |||||||||||||| || Sbjct 342586 CGCTAAGCGCCACCGTAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCAGCCAT 342645 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || ||||| ||||| || || ||||| |||| || || |||| ||||||| Sbjct 342646 CCGTCGCCTTGCTCGGCGTGGCGGTGTGAAGCGCATCTCGGGGCTGATCTACGAAGAGAC 342705 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||| | ||| ||| |||| |||||| | || ||||| Sbjct 342706 GCGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATCCGCGATGCTGTGACGTACACCGA 342765 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| || || | ||||| | || || || |||| || || || Sbjct 342766 GCATGCCAAGAGGAAGACGGTGACAGCTATGGACGTAGTGTACGCCCTGAAGCGGCAGGG 342825 Query 16672 CCG 16674 || Sbjct 342826 ACG 342828 Score = 122 bits (134), Expect = 1e-23 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| || || || || ||||| || || || ||||| |||||| Sbjct 269579 GCTAAGCGTCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATTACTAAGCCGGCTATC 269638 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| || || ||||| |||| || ||| |||| || |||| Sbjct 269639 CGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGCTTGATCTACGAGGAGACG 269698 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || ||| ||| || | || ||| | ||| |||||| Sbjct 269699 CGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGACGCTGTTACCTACACCGAG 269758 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | || || || | || || || || Sbjct 269759 CACGCCAAGAGGAAGACCGTGACGGCCATGGACGTAGTGTACGCGCTTAAGCGCCAGGGA 269818 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 269819 CGTACCCTCTACGGCTTCGGTGGTTAA 269845 >seq2367 Length=1530 Score = 122 bits (134), Expect = 1e-23 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| || || || || ||||| || || || ||||| |||||| Sbjct 212 GCTAAGCGTCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATTACTAAGCCGGCTATC 271 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| || || ||||| |||| || ||| |||| || |||| Sbjct 272 CGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGCTTGATCTACGAGGAGACG 331 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || ||| ||| || | || ||| | ||| |||||| Sbjct 332 CGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGACGCTGTTACCTACACCGAG 391 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | || || || | || || || || Sbjct 392 CACGCCAAGAGGAAGACCGTGACGGCCATGGACGTAGTGTACGCGCTTAAGCGCCAGGGA 451 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 452 CGTACCCTCTACGGCTTCGGTGGTTAA 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79025154492048