Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq332 149 1e-31
seq2367 122 1e-23
>seq332
Length=2130183
Score = 149 bits (164), Expect = 1e-31
Identities = 177/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | || || || |||||||| || ||||||||||| || ||
Sbjct 320238 CGCCAAGCGTCATCGTAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 320297
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| || ||||||||||| || |||||||| |||| || ||| |||| || ||||
Sbjct 320298 CCGTCGCCTTGCTCGTCGTGGCGGTGTCAAGCGCATCTCGGGGTTGATCTACGAGGAGAC 320357
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||| | ||| ||| |||| |||||| | ||| |||||
Sbjct 320358 GCGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATCCGCGATGCTGTGACCTACACCGA 320417
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || |||||||| | || || || |||| || || ||
Sbjct 320418 GCACGCCAAGAGGAAGACGGTGACAGCCATGGATGTGGTGTACGCTCTGAAGCGGCAGGG 320477
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | || || || |||||||| || |||||||||||||| ||
Sbjct 342586 CGCTAAGCGCCACCGTAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCAGCCAT 342645
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| || ||||| ||||| || || ||||| |||| || || |||| |||||||
Sbjct 342646 CCGTCGCCTTGCTCGGCGTGGCGGTGTGAAGCGCATCTCGGGGCTGATCTACGAAGAGAC 342705
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||| | ||| ||| |||| |||||| | || |||||
Sbjct 342706 GCGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATCCGCGATGCTGTGACGTACACCGA 342765
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || | ||||| || || | ||||| | || || || |||| || || ||
Sbjct 342766 GCATGCCAAGAGGAAGACGGTGACAGCTATGGACGTAGTGTACGCCCTGAAGCGGCAGGG 342825
Query 16672 CCG 16674
||
Sbjct 342826 ACG 342828
Score = 122 bits (134), Expect = 1e-23
Identities = 187/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| |||| || || || || ||||| || || || ||||| ||||||
Sbjct 269579 GCTAAGCGTCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATTACTAAGCCGGCTATC 269638
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||||||| ||||| || || ||||| |||| || ||| |||| || ||||
Sbjct 269639 CGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGCTTGATCTACGAGGAGACG 269698
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || ||| ||| || | || ||| | ||| ||||||
Sbjct 269699 CGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGACGCTGTTACCTACACCGAG 269758
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| || || ||||||| | || || || | || || || ||
Sbjct 269759 CACGCCAAGAGGAAGACCGTGACGGCCATGGACGTAGTGTACGCGCTTAAGCGCCAGGGA 269818
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || || || |||||
Sbjct 269819 CGTACCCTCTACGGCTTCGGTGGTTAA 269845
>seq2367
Length=1530
Score = 122 bits (134), Expect = 1e-23
Identities = 187/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| |||| || || || || ||||| || || || ||||| ||||||
Sbjct 212 GCTAAGCGTCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATTACTAAGCCGGCTATC 271
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||||||| ||||| || || ||||| |||| || ||| |||| || ||||
Sbjct 272 CGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGCTTGATCTACGAGGAGACG 331
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || ||| ||| || | || ||| | ||| ||||||
Sbjct 332 CGCGGCGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGACGCTGTTACCTACACCGAG 391
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| || || ||||||| | || || || | || || || ||
Sbjct 392 CACGCCAAGAGGAAGACCGTGACGGCCATGGACGTAGTGTACGCGCTTAAGCGCCAGGGA 451
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || || || |||||
Sbjct 452 CGTACCCTCTACGGCTTCGGTGGTTAA 478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79025154492048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |