Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3828 120 4e-22 seq325 105 8e-18 seq797 100 4e-16 >seq3828 Length=4044606 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||||||||| | ||| || || || || |||||||| ||||| || |||||||||| Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 1121824 CAACCACTCTCTCACC 1121839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| |||||||| ||||||||||||||||| |||| || || |||| Sbjct 1128605 CCAAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAACGTGAGAGATAA 1128664 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | |||||||| |||| | | || || ||||||| Sbjct 1128665 AGTATTTTTCATCTGCTTTCAGCTTGTTCCAAT 1128697 >seq325 Length=5823465 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || ||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || |||||||||||||||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 33446 C 33446 | Sbjct 5212252 C 5212252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 |||| ||||| |||||||| | || |||||||| || | ||| || || ||||| |||| Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||||||||| ||||||||||||||||| || || | || || || |||| ||| || Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || || || ||||| |||||| || |||||| | | || || | ||||| || Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| || ||||| | | ||||||| Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGG 66301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622520979525760