Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1844 125 7e-24 seq324 105 6e-18 >seq1844 Length=2686333 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | ||| | ||| || ||||| || |||||||| ||| Sbjct 2460755 AGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 2460696 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||||| ||| || ||||||||||| || |||| | | ||||||||| || | Sbjct 2460695 AGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 2460636 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 2460635 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 2460576 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| || || || || || || || |||||||| Sbjct 2460575 CCTCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| ||||| || || |||||||| ||| Sbjct 2460525 CCACCCCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAG 2460466 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2460465 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2460406 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 2460405 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 2460346 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| || || || || || || || |||||||| Sbjct 2460345 TCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| ||||| || | |||||||| ||| Sbjct 2460069 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAG 2460010 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || ||||||||||| || |||| | | ||||||||| || || Sbjct 2460009 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2459950 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || | | ||| | || || ||| ||| | Sbjct 2459949 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 2459890 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 2459889 TCAAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2459843 >seq324 Length=3932543 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| || || | || |||||||| || |||||||| || Sbjct 118754 GCCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 118695 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| || | ||||||||| || || Sbjct 118694 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGG 118635 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 118634 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCAAC 118575 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 118574 TTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 118527 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| || || | || |||||||| || |||||||| || Sbjct 118982 GCCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 118923 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 118922 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 118863 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| || |||| | || | || || ||| ||| | Sbjct 118862 AATGCCTTCTTTATCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCAAC 118803 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 118802 CTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 118754 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| || ||||| || |||||||| || | Sbjct 119209 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 119150 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 119149 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 119090 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 119089 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 119030 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 119029 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATG 118982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471689848842240