Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1844 107 2e-18 seq324 98.7 8e-16 >seq1844 Length=2686333 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 ||||| |||| || | ||| || | ||| || ||||| ||||| || ||||||||||| Sbjct 2460299 TACCC-CCTCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2460241 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | || ||||| || ||||| ||| | || |||| ||| ||||| Sbjct 2460240 GACAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 2460181 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| ||||| || || || ||| ||||| | | | ||||||| ||||| Sbjct 2460180 GGAATGCCTTCTTTATCCTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCGCTGGGCT 2460123 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | |||||||||||| || ||||| || || ||||| |||||||| Sbjct 2460122 CAACCTCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| | ||| |||| Sbjct 2460739 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTC 2460680 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 2460679 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 2460620 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | ||||||| Sbjct 2460619 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 2460562 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || ||||| |||||||| Sbjct 2460561 GTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| || ||||| || || ||||||||||||| | ||| | || Sbjct 2460511 CAGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATC 2460452 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 2460451 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 2460392 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | ||||||| Sbjct 2460391 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 2460334 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || ||||| |||||||| Sbjct 2460333 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || || ||||| || | ||||||||||||| | ||| |||| Sbjct 2460055 CAGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTC 2459996 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 2459995 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 2459936 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | | ||||| | |||||| || | ||| ||| Sbjct 2459935 CTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATG 2459878 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || ||||| |||||||||||| Sbjct 2459877 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 2459839 >seq324 Length=3932543 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | | Sbjct 118753 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118694 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||| || ||||| ||| | || | || ||| ||||| Sbjct 118693 AGGGT----GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGG 118638 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 || | |||||| ||||| || || || ||| || | | | ||||| | |||| Sbjct 118637 GGGAATGCCCTCCTTGTCCTGGATCTTAGC--CTTGACATTTTCGATGGTGTCACTGGGC 118580 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || ||||| |||||||| || || ||||| || || || || ||||||||||| Sbjct 118579 TCAACTTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| || | ||| || ||||| ||||| || ||||||| Sbjct 119215 CAGTTACCACCCCTC--AGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGT 119158 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | || ||| | || |||| || ||||| ||| | || |||| ||| |||| Sbjct 119157 AGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 119098 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | |||||| ||||| || || || ||| || | | | ||||| | Sbjct 119097 CGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTTTCGATGGTGTCACT 119040 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| |||| ||||||||| || || |||| || |||||||| |||||||| Sbjct 119039 GGGCTCAACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 118983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | | Sbjct 118981 CCACCTCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 118922 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 118921 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 118862 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || ||| || || | | | ||||| | |||||| Sbjct 118861 ATGCCTTCTTTATCCTGGATCTTGGCT--TTGACATTTTCGATGGTGTCACTGGGCTCAA 118804 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||| || || ||||| |||||||| Sbjct 118803 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404817767820640