Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq325 102 1e-16 seq797 100 4e-16 seq3828 84.2 3e-11 >seq325 Length=5823465 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| || ||||| ||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 32803 C 32803 | Sbjct 5212252 C 5212252 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 32308 TGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACT 32363 |||| ||||||| || |||| || | ||| |||||| |||| ||||| ||| Sbjct 5210828 TGTTCATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTG-GACATGACT 5210886 Query 32364 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGAT 32423 ||||| | || |||||||| || | ||| || || ||||| ||||| ||||| | || Sbjct 5210887 CCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTTTGCCTTCCAGAGAG 5210946 Query 32424 ATATTTTCCATGAAATCGAATGGATT 32449 || ||||||||||| || || ||||| Sbjct 5210947 ATGTTTTCCATGAAGTCAAAAGGATT 5210972 >seq797 Length=179301 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||||||||| ||||||||||||||||| || || | || || || |||| ||| || Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || || || ||||| |||||| || |||||| | | || || | ||||| || Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| || ||||| | | ||||||| Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGG 66301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| || || || ||||| || || || || || | Sbjct 55937 CACTGAAGACTTTCTTGGTTTCTTTGTGCAGGTTGGAGACGGCGATCCTGGCAGCCAGGA 55878 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||| || || || || | || || ||||| || | || || |||| ||||||| Sbjct 55877 TGGCGTAGTCGGGGTGCTTGGTGGTCAGGGTGGCGGCGGTCTCAGCAGCCAAGGTGTCCA 55818 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 | || || || || |||||| | || | || ||||| |||||||| Sbjct 55817 ACTCCACTGTGGTGACACCACTGTACAGCCCCTGGATCACCTTCAT 55772 >seq3828 Length=4044606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 || |||||||| |||||||| ||||||||||||||||| |||| || || ||||| Sbjct 1128607 AAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAACGTGAGAGATAAAG 1128666 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 |||||||| |||| | | || || ||||||| Sbjct 1128667 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 1128697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633198468985600