Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1844 100 2e-16 seq324 96.9 3e-15 >seq1844 Length=2686333 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || ||||| || || |||||||| || Sbjct 2460300 ATACCCCCTCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2460241 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || ||||| |||| || | ||| ||||| || Sbjct 2460240 GACAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 2460181 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || ||||| ||| | | |||| ||||||| ||| || Sbjct 2460180 GGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCA 2460121 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||| || || ||||| |||||||| Sbjct 2460120 ACCTCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| | || || |||||| || || || ||| Sbjct 2460495 GTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2460436 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 2460435 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2460376 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | |||||||| ||||| || Sbjct 2460375 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAGGGTC 2460316 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2460315 TTCACAAAGATCTGCAT 2460299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || ||||| || || || ||| Sbjct 2460723 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2460664 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 2460663 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 2460604 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | ||||| || ||||| || Sbjct 2460603 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTCCCAGTCAGGGTC 2460544 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2460543 TTCACAAAGATCTGCAT 2460527 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| | |||||||| ||| | || || ||||| || || || ||| Sbjct 2460039 GTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2459980 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 2459979 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 2459920 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 2459919 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATGGTCTTGCCAGTCAGGGTC 2459860 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2459859 TTCACAAAGATCTGCAT 2459843 >seq324 Length=3932543 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || || || |||||| || || || ||| Sbjct 118951 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 118892 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || |||||||||||||| || ||||| ||| Sbjct 118891 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTATCCTGGATCTTGGCTTTG 118832 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 118831 ACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 118772 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 118771 TTCACAAAGATCTGCATG 118754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419854130442432