Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq797 136 7e-27 seq25906 91.5 3e-13 seq3828 87.8 3e-12 >seq797 Length=179301 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| || || || ||||||||||| |||| |||||||| Sbjct 68291 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGG 68232 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| |||| |||||||| ||||||||||||||| |||| Sbjct 68231 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAATCCTTGTAGAGCATGTAGGGAG 68172 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 ||| ||||| ||||| ||| || | | |||||| | | ||||| ||| || Sbjct 68171 TCCCAGTCTCTGTCTGGGATTCGATGATGGAATACCAGAGCTGCTGGGCCTTCACCACCC 68112 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTA 244908 |||| || ||||| ||||||| Sbjct 68111 TGCGGGCACGGCCCTGCTCCTCGTA 68087 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || ||||| |||||| ||||| || | || ||| |||| | Sbjct 72074 CCTTTGCTGACAGGAGAGCCCTGGTAGGTTTCATAGGGCCCCTGCTCCTTGGCGAGCTCA 72015 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 ||||| | || | ||| |||| ||||||||||| |||||| || ||| | | | Sbjct 72014 CAGCTGGCTTCCAAGGCCCCGTAATAGATGGTCTCAAAGATCTGCTGGTTGAGCTGCTGT 71955 Query 244442 GCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 |||| | || | || ||||| | ||||| |||||| |||| ||||| |||||||| Sbjct 71954 GCCTGGGGGCTC-TCAAAGGGATATCTCATCAGGATGAAGGCGTCTGCCAGGCCCTGCAC 71896 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 |||||| |||||||| | || ||| |||||||||| ||| | ||| Sbjct 71895 GCCGATCCCGATGGGGCGATGGCGCCGGTTGGAGCGCTCGGCCTGGGG 71848 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| || || ||||||||||| ||| |||||||||| |||||||| ||| Sbjct 66438 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTT 66379 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| | | || | || ||||||| ||| | |||||||||||||| || Sbjct 66378 CCCAGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAGATA 66319 Query 245131 GA 245132 || Sbjct 66318 GA 66317 >seq25906 Length=586 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||||||| || ||||| ||| Sbjct 424 ACCTGAAACTCTCCTGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 365 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| || || |||||||| |||| || || Sbjct 364 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCTGTTGGCATGGGGGACAGGAGAAGG 305 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || || | ||| Sbjct 304 CTGTTCCTGACCCCATACCT 285 >seq3828 Length=4044606 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || |||||||||||||| || |||| || Sbjct 1121839 GGTGAGAGAGTGGTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCAGGTTCCTTTGCT 1121780 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||| | ||| ||| ||| | |||||| ||||| || ||||| || ||||| Sbjct 1121779 GCTATATTTTGGTTGAAGAAGAGAGGCCT-GATGCCTGGACTGACTTTCTCCAATGAACT 1121721 Query 42815 CATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 1121720 TATTAGCAGAGATGAGG 1121704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943693083119360