Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1844 140 8e-28 seq324 116 9e-21 seq3230 89.7 1e-12 >seq1844 Length=2686333 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || ||||| || ||| Sbjct 2460282 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2460223 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || || || || || || |||||||| | ||| || | || || |||||||||||| Sbjct 2460222 TCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 2460163 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || ||||||||||| || || | ||||| | || || ||||| ||||| || Sbjct 2460162 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTT 2460103 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || |||||||| Sbjct 2460102 TTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||| || ||||||| ||| ||||| |||||||| | || || || || ||| Sbjct 2460033 TCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 2459974 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || ||||| || |||||||| || ||||||||||| Sbjct 2459973 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTC 2459914 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || || || ||||| || ||||| ||||| || Sbjct 2459913 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATGGTCTTGCCAGTCAGGGTCTTCACA 2459854 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2459853 AAGATCTGCATTTTG 2459839 >seq324 Length=3932543 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || || || ||| Sbjct 118945 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 118886 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| ||| |||||| || ||||||||||||||||| || ||||| || Sbjct 118885 ATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCTTTATCCTGGATCTTGGCTTTGACA 118829 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| || |||| ||||| Sbjct 118828 TTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTC 118769 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 118768 ACAAAGATCTGCAT 118755 >seq3230 Length=1922383 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||||||||| || |||||||| || || || | |||| | | ||| || || Sbjct 1125403 CCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTATCGTTGGGTTCCACCTCC 1125462 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 1125463 AAGGTGATGGTTTTTCCCGTCAGCGTCTTCACGAAGATCTGCAT 1125506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178827102471008