Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq324 127 2e-24 seq797 82.4 7e-11 >seq324 Length=3932543 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | |||||||| || || || ||||| || || ||||| | Sbjct 118741 CGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 118682 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | |||||| ||||| || |||||||||||| Sbjct 118681 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 118622 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||||| |||||| | ||| ||||| | || | Sbjct 118621 TCCTGGATCTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATG 118562 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 118561 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 118527 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || ||||| | Sbjct 119197 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 119138 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| ||||| || |||||||||||| Sbjct 119137 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 119078 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||||| |||||| | ||| || || | ||| | Sbjct 119077 TCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 119018 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| |||| || || ||||| ||||||||| Sbjct 119017 GTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATG 118982 >seq797 Length=179301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/117 (76%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| |||||| | |||| ||| || || | |||||||||||||| ||||||| |||| Sbjct 68287 CTCATCCTTGCTGGTGTACTCCACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCC 68228 Query 146724 CAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || || | ||||| || |||| ||||||| ||||||||||||||||| || Sbjct 68227 CAGGTTCTGCTGGTTGCT---CTTGCGGTTGCAGGAATCCTTGTAGAGCATGTAGGG 68174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475175462352640