Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3929 152 7e-32 seq1197 93.3 6e-14 >seq3929 Length=4502058 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || ||||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 980009 ATGAGTCGAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 979950 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || || || Sbjct 979949 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 979890 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || || |||||||| || | ||| || | ||| |||| | || ||||| | || | Sbjct 979889 ACCAACCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGCACATGAGGAGGG 979830 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 979829 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 979770 Query 9967 TG 9968 || Sbjct 979769 TG 979768 Score = 129 bits (142), Expect = 8e-25 Identities = 206/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || || |||||| || ||||| ||| | || || | Sbjct 981976 GGAAGGCAGTGAAAGGACAGCCTTTAACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 981917 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || || |||||||| ||||||||| | || | Sbjct 981916 TGTTGATTATCTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGTG 981857 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 981856 AGCAGATTGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 981797 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || ||||||||||| || || || ||||| |||| || ||| | || || || | Sbjct 981796 TTTCTCCAAAGATGGCACCTGGTCGTGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 981737 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 981736 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 981681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||||| || |||| ||| || || || ||| | Sbjct 977375 CTTACGTGTTGTACAGTTTTCTCCATAAAATCCTGTCCTCGTGCAGTCACATTCATACTG 977316 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||||||| ||||||||||| |||| ||||| || |||| ||||| || ||||| Sbjct 977315 ATCAAACCCTGTTGTCATGCATACTCCTCTGTTCTGACATGGGTTGGAACAACACGGGTT 977256 Query 10960 GGCTGCAAT 10968 ||||||||| Sbjct 977255 GGCTGCAAT 977247 >seq1197 Length=5421966 Score = 93.3 bits (102), Expect = 6e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || || || || || || | | || || ||||| ||||||||||| ||| | Sbjct 4397948 TGCTGTCTTAACTATCTCGAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAATACTC 4398007 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 ||||||||||| ||| | | ||||| || | |||||| ||||| || | ||| | Sbjct 4398008 TGGGGAGCAGATAGGGTTTCCAAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCAC 4398067 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || || || ||| | ||||| || | | ||||| | ||| | Sbjct 4398068 CATGCTTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAA 4398127 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| ||||| || | |||| ||| || || |||| | ||| || Sbjct 4398128 CTCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCTTCCTCCCC 4398187 Query 9175 TACA 9178 | || Sbjct 4398188 TGCA 4398191 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| ||||||| |||||||| | || || || ||| ||||||| || | ||| Sbjct 4399498 TGCCAGTGGTAGAGTTGGTTGAACTCCACTGCGATGCGATTCCGGTACTGGAACGGGGTC 4399557 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 || ||||| | ||| |||||||| | || || | |||||||||||| || ||||| Sbjct 4399558 CCAAACAGCAGCTCGGGGTCAAACTTGAGGCTGAGGAAGTACCCGCTGAGGTGTTGGACG 4399617 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || | || | ||| || ||||||||||| Sbjct 4399618 TAGTCCTCAATCACAATCTTGATGGTTTCCCC 4399649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723232825302400