Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3231 109 2e-18 seq338 95.1 5e-14 >seq3231 Length=6269119 Score = 109 bits (120), Expect = 2e-18 Identities = 397/607 (65%), Gaps = 26/607 (4%) Strand=Plus/Plus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 || |||||||| || || || ||||| || || ||||| || ||| | || | | | Sbjct 5108937 GAGATTGTGCTGGTGGGGGGCTCTACCCGTATCCCTAAGATCCAAAAGCTGCTACAGGAC 5108996 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | || |||||||| |||||||| || Sbjct 5108997 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGTTGCTTA 5109052 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGA 452070 |||||||| || ||||||||||| || | || ||| | ||| || | || Sbjct 5109053 CGGTGCTGCTGTGCAAGCAGCTATACTCATGGG---AGACAAGTCTGAGAATGTGCAGGA 5109109 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||| | | ||||| || ||||| || || || | || ||||| |||||| |||| Sbjct 5109110 TCTACTGCTGCTGGATGTCACCCCTCTGTCCCTGGGCATCGAGACAGCCGGTGGAGTGAT 5109169 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 |||| | | || || || || | ||||| ||| | | ||| || || | | Sbjct 5109170 GACTGCTCTCATCAAGCGCAACACCACCATTCCCACCAAACAAACTCAGACCTTCA--CC 5109227 Query 452191 AGCAAGT--GATAACCA-ACCAGGTGTAACTA-TTCAAGTGTTTGAAGGAGAACGTGCAA 452246 | | | | || ||||| | || |||| ||| | || |||| || || || | || | Sbjct 5109228 ACCTACTCAGACAACCAGAGCA-GTGT-CCTAGTCCAGGTGTACGAGGGTGAGAGGGCTA 5109285 Query 452247 TGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAA 452306 ||||| ||||| || ||| || | ||| ||| | ||| || || || Sbjct 5109286 TGACAAAGGATAACAACTTACTGGGCAAGTTTGATCTAACGGGCATCCCCCCAGCACCCC 5109345 Query 452307 GGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGA 452366 | ||| || || || || | || | ||| ||||||| |||||||| || ||||| | Sbjct 5109346 GTGGAGTCCCCCAGATCGAGGTCACTTTTGACATTGATGCCAATGGTATCCTGAATGTCA 5109405 Query 452367 GTGCAGTTGA-AAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAAC 452425 |||| || || || | || | || ||| | | || || || || || ||||| || Sbjct 5109406 GTGCTGTGGACAAGAGCA-CAGGTAAAGAAAACAAGATCACCATCACCAATGACAAGGGT 5109464 Query 452426 CG-TTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGA 452484 || ||| | ||||| || ||||| ||||| | ||||||||||| | ||| | || Sbjct 5109465 CGCCTTAGC-AAAGATGACATTGACCGGATGGTGCAAGAAGCAGAAAAGTACAAAGCAGA 5109523 Query 452485 TGATGAA 452491 |||||| Sbjct 5109524 GGATGAA 5109530 Score = 100 bits (110), Expect = 1e-15 Identities = 287/436 (66%), Gaps = 9/436 (2%) Strand=Plus/Plus Query 451177 TGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAAC 451236 ||| || ||| | | || |||||| | | ||||| | || || ||||| | || || Sbjct 5108213 TGTGGTGAATGAGAGTGGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGAC 5108272 Query 451237 TTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACA 451296 || || || || || || ||||| ||||| || |||||||| | || || Sbjct 5108273 CTTCTTCCCAGAGGAGATCAGCTCCATGGTCCTTACCAAGATGAAAGAGATTGCTGAGGC 5108332 Query 451297 ATATATTGGTTCTCCAGTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATG 451355 ||| | || | | || | | || ||| || || || || || ||||| |||||||| Sbjct 5108333 TTATCTGGGA-CGCAAGGTGCAGAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACT 5108391 Query 451356 CACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTA 451415 | || || || || || ||||| || || || |||| | ||||| | || |||| Sbjct 5108392 CTCAGCGCCAGGCCACCAAAGACGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTA 5108451 Query 451416 TTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----AC 451470 | || || || |||||||||||| |||| ||||| || ||| || ||| | | | Sbjct 5108452 TCAACGAGCCAACAGCAGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACTCGGGC 5108509 Query 451471 AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 | ||| || ||| | | | ||||| || || || || ||| ||| || | || Sbjct 5108510 TGGAGAGAAGAATGTGCTCATCTTTGACTTAGGAGGGGGTACTTTCGATGTGTCCATCCT 5108569 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 | | ||||| ||||| | ||||| || ||| | || |||||| || ||||| || || Sbjct 5108570 TACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGG 5108629 Query 451591 TGAAGATATTGATAAT 451606 || || |||| ||| Sbjct 5108630 GGAGGACTTTGACAAT 5108645 >seq338 Length=1383603 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || ||| Sbjct 65767 GTTACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCCCAGCGTCAGGCTACT 65826 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||||||| ||||| || | || || || |||| || ||||| || ||||| Sbjct 65827 AAAGATGCAGGAACCATTGCAGGGCTCAACGTGCTGAGAATCATCAATGAGCCAACAGCT 65886 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 65887 GCTGCCATTGCTTATGGTCT 65906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974332818807488