Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3231 116 3e-20 seq338 107 1e-17 seq2410 96.9 3e-14 >seq3231 Length=6269119 Score = 116 bits (128), Expect = 3e-20 Identities = 333/506 (66%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | ||||| || |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 5109409 GCACTGACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGACT 5109350 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| || | || ||| | ||||| || ||||| || Sbjct 5109349 CCACGGGGTGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGTAAGTTGTTATCCTTT 5109290 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGAAT 517436 || | | ||||||||| | | |||| ||| | ||| | | || || ||||| | Sbjct 5109289 GTCATAGCCCTCTCACCCTCGTACACCTGGACTAGGACACTGC--TCTGGTTGTCTGAGT 5109232 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 5109231 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCA 5109173 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 5109172 GTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAGT 5109113 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 5109112 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGTATAGCTGCTTGCACAGCAGCACCG 5109053 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||||| |||||||| || | | | || || | ||| |||||||| || | Sbjct 5109052 TAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 5108993 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || || | | | |||||| ||||| | || || || || | ||||| || || Sbjct 5108992 TGTAGCAGCTTTTGGATCTTAGGGATACGGGTAGAGCCCCCCACCAGCACAATCTCCTGG 5108933 Query 517736 ACCTGTGATTTATCCAGTTTTGAATC 517761 | ||| ||||| || || | ||| Sbjct 5108932 ATCTGGCCCTTATCGAGCTTGGCATC 5108907 >seq338 Length=1383603 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| |||||||| ||||| ||||| || ||||||| || Sbjct 65915 TTCTTGTCCAGACCATAAGCAATGGCAGCAGCTGTTGGCTCATTGATGATTCTCAGCACG 65856 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||||||||||||||| || || | || || || || ||||| Sbjct 65855 TTGAGCCCTGCAATGGTTCCTGCATCTTTAGTAGCCTGACGCTGGGAGTCATTGAAATAG 65796 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 65795 GCTGGCACAGTCACTACAGCATTAGTAAC 65767 Score = 95.1 bits (104), Expect = 9e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| ||||| |||| | || || ||||||||||||| Sbjct 64971 CAAAAACTGTATTGGTTGGATTCATTGCCACTTGGTTCTTTGCAGCATCTCCAATCAACC 64912 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | || || || || || | || || |||||||| |||| Sbjct 64911 TCTCTGTGTCTGTGAAGGCGACGTAGCTGGGGGTGGTCCTGTTCCCCTGATCATTGGCAA 64852 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || || || || |||| ||| | ||||| ||||| | | || || || | ||||| Sbjct 64851 TGATCTCCACCTTCCCATGTTGGAACACACCAACACAGGAATAGGTGGTGCCAAGATCAA 64792 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 64791 TCCCGACAGC 64782 >seq2410 Length=3354484 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || ||||| ||||| || || ||| | ||||| | | ||||| Sbjct 386674 TGTTGTGGCTACAGTGGCCTTTGGAATGGGCATCAACAAAGCAGATGTCCGGATGGTTAT 386615 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || |||||| | || ||| |||||||| |||||||| ||||| ||||| Sbjct 386614 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTATCAGGAAATTGGGAGAGCTGGTCG 386555 Query 367113 TGATGG 367118 ||||| Sbjct 386554 GGATGG 386549 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || ||||| ||||| || || ||| | ||||| | | ||||| Sbjct 391424 TGTTGTGGCTACAGTGGCCTTTGGAATGGGCATCAACAAAGCAGATGTCCGGATGGTTAT 391365 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || |||||| | || ||| |||||||| |||||||| ||||| ||||| Sbjct 391364 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTATCAGGAAATTGGGAGAGCTGGTCG 391305 Query 367113 TGATGG 367118 ||||| Sbjct 391304 GGATGG 391299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778106219379616