Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1844 125 2e-23 seq324 118 2e-21 >seq1844 Length=2686333 Score = 125 bits (138), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || |||||||| | || ||||| |||| || || | ||| ||||| Sbjct 2460051 ACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 2459992 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2459991 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 2459932 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||||||||| ||| || || |||||||| | ||| Sbjct 2459931 ATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTTATGGTC 2459875 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || || || | ||||||| Sbjct 2459874 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 2459841 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | ||| ||||| Sbjct 2460735 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 2460676 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||||||||| || Sbjct 2460675 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGG 2460616 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | || Sbjct 2460615 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTT 2460559 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2460558 TTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || |||||||| || || ||||| |||| || || | ||||||||| Sbjct 2460507 ACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCC 2460448 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 2460447 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 2460388 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || || ||||| | || Sbjct 2460387 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTT 2460331 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 2460330 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||| || || || || ||||| || | || || Sbjct 2460292 TCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 2460233 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| | |||||| || || ||||| || | || ||||| || |||||||| Sbjct 2460232 GCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 2460173 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||| || || || || || ||||||||||||||||| Sbjct 2460172 TTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC 2460131 >seq324 Length=3932543 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| ||||| ||||| || || || ||||| || | || || Sbjct 118976 TCTCAGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 118917 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || ||||| |||||||| Sbjct 118916 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 118857 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||| || || || || ||||| || || |||||||| ||| || || || Sbjct 118856 TTCTTTATCCTGGATCTTGGCTTTGACATTTTCGATGGTGTC---ACTGGGCTCAACCTC 118800 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| |||||||| || || || || | ||||| Sbjct 118799 CAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108703515006512