Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq325 138 1e-27 seq3828 105 8e-18 >seq325 Length=5823465 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||||| ||||||||| | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || |||||| Sbjct 5212252 CTACTACTCGTTCTCC 5212267 >seq3828 Length=4044606 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| ||||| || | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||||| |||||| || || || ||||| || ||||| || || ||||| | Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 1121824 CAACCACTCTCTCACC 1121839 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 19335 AAATCTTTCG-ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 ||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||| | | Sbjct 1128593 AAAGCTTTCTCACCAAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAA 1128652 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 | || ||||| | ||||||||||| | | | ||||||| | || || || | Sbjct 1128653 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAATGAGGAAGGTCCTTTG 1128712 Query 19454 ATAAATCTAC 19463 | ||||| || Sbjct 1128713 ACAAATCAAC 1128722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561724205159040