Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq338 114 1e-19 seq1844 87.8 1e-11 >seq338 Length=1383603 Score = 114 bits (126), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 65767 GTTACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCCCAGCGTCAGGCTACT 65826 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| ||||| || || || || || | || |||||||| || || ||| Sbjct 65827 AAAGATGCAGGAACCATTGCAGGGCTCAACGTGCTGAGAATCATCAATGAGCCAACAGCT 65886 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 65887 GCTGCCATTGCTTATGGTCTGGACAA 65912 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| || Sbjct 64781 AGCTGTCGGGATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTGTTCCAACATGGGAA 64840 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || |||||||||||||| || ||||| || || || || || | ||||| Sbjct 64841 GGTGGAGATCATTGCCAATGATCAGGGGAACAGGACCACCCCCAGCTACGTCGCCTTCAC 64900 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACC 550168 || || || || |||| ||||| ||||| | ||| | || || ||||| ||| Sbjct 64901 AGACACAGAGAGGTTGATTGGAGATGCTGCAAAGAACCAAGTGGCAATG--AATCCAACC 64958 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 64959 AATACAGTTTTTG 64971 >seq1844 Length=2686333 Score = 87.8 bits (96), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || || |||||||| ||||| ||| || || ||||| |||| || || Sbjct 2460291 CTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 2460232 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| | || || || ||||| || || || ||||| ||||| ||||| ||| Sbjct 2460231 CGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 2460172 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 |||||||| || || || ||| || |||||| || || || | | ||||| Sbjct 2460171 TCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGG 2460112 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| ||||| || || || || || || ||||| Sbjct 2460111 GTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || || || || ||||| ||||| ||| | | ||| || ||||| || | || Sbjct 2460520 CCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTCTGG--ATGTTGTAGTCGGAGAGG 2460463 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 2460462 GTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 2460403 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || || || || |||||| || ||| || | | ||| Sbjct 2460402 CCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCG 2460343 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | ||||| ||||| || || || || || || |||||| Sbjct 2460342 AGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 2460298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026401313460640