Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq338 114 1e-19
seq1844 87.8 1e-11
>seq338
Length=1383603
Score = 114 bits (126), Expect = 1e-19
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| ||| | ||||| ||||| ||||| |||||||| || ||||| ||||||
Sbjct 65767 GTTACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCCCAGCGTCAGGCTACT 65826
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||| ||| ||||| || || || || || | || |||||||| || || |||
Sbjct 65827 AAAGATGCAGGAACCATTGCAGGGCTCAACGTGCTGAGAATCATCAATGAGCCAACAGCT 65886
Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536
||||| |||| ||||| || || ||
Sbjct 65887 GCTGCCATTGCTTATGGTCTGGACAA 65912
Score = 91.5 bits (100), Expect = 1e-12
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| ||
Sbjct 64781 AGCTGTCGGGATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTGTTCCAACATGGGAA 64840
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| || || |||||||||||||| || ||||| || || || || || | |||||
Sbjct 64841 GGTGGAGATCATTGCCAATGATCAGGGGAACAGGACCACCCCCAGCTACGTCGCCTTCAC 64900
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACC 550168
|| || || || |||| ||||| ||||| | ||| | || || ||||| |||
Sbjct 64901 AGACACAGAGAGGTTGATTGGAGATGCTGCAAAGAACCAAGTGGCAATG--AATCCAACC 64958
Query 550169 AATACTATTTTTG 550181
||||| ||||||
Sbjct 64959 AATACAGTTTTTG 64971
>seq1844
Length=2686333
Score = 87.8 bits (96), Expect = 1e-11
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|| || || || |||||||| ||||| ||| || || ||||| |||| || ||
Sbjct 2460291 CTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 2460232
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| |||||| | || || || ||||| || || || ||||| ||||| ||||| |||
Sbjct 2460231 CGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 2460172
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433
|||||||| || || || ||| || |||||| || || || | | |||||
Sbjct 2460171 TCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGG 2460112
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| | ||||| ||||| || || || || || || |||||
Sbjct 2460111 GTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071
Score = 86.0 bits (94), Expect = 5e-11
Identities = 155/225 (69%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| || || || || ||||| ||||| ||| | | ||| || ||||| || | ||
Sbjct 2460520 CCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTCTGG--ATGTTGTAGTCGGAGAGG 2460463
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || || || || ||||| || || || ||||||||||| |||||
Sbjct 2460462 GTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 2460403
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430
||||| || || || || || || || |||||| || ||| || | | |||
Sbjct 2460402 CCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCG 2460343
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || | ||||| ||||| || || || || || || ||||||
Sbjct 2460342 AGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 2460298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4026401313460640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |