Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2435 114 1e-20 seq1213 86.0 5e-12 >seq2435 Length=9698745 Score = 114 bits (126), Expect = 1e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||| | ||| Sbjct 8898882 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCTAAGTC 8898823 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || ||||| | Sbjct 8898822 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTGGCAT 8898764 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||| ||||||| ||||| || || || || || | Sbjct 8898763 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAGCC-CT-ACAAAAC 8898706 Query 30329 ACAG 30332 |||| Sbjct 8898705 ACAG 8898702 >seq1213 Length=7152351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164 ||||||||||| || |||| || || |||||| | | ||| | |||||| || || ||| Sbjct 6676340 AGCTCCCTGCTTAGCACTATATTAATTCTGTCTTTTAAAGGCCGATTCTTCTCAGGAATG 6676281 Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| || ||||| |||||||||| | ||||| || ||| Sbjct 6676280 GAGAACCAGGTTTTTCTGCCCATTATCAGTGCATTCTGTTTCCCT 6676236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408345013242128