Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq797 122 2e-22 seq3230 95.1 2e-14 seq25906 86.0 1e-11 >seq797 Length=179301 Score = 122 bits (134), Expect = 2e-22 Identities = 127/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||| || ||||| |||||||||| |||||||||||||||||| ||| Sbjct 68274 GTGTACTCCACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGG 68215 Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| ||| | |||| |||||||||||||||||||||| | ||| |||||| ||| Sbjct 68214 TTGCTCTT-GCGGTTGCAGGAATCCTTGTAGAGCATGTAGGGAGTCCCAGTCTCTGTCTG 68156 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || |||||| | | |||||| ||||||| Sbjct 68155 GGATTCGATGATGGAATACCAGAGCTGCTGGGCCTTCACCACCC 68112 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || ||||||||| | ||||| || ||||||||||| ||||| Sbjct 72074 CCTTTGCTGACAGGAGAGCCCTGGTAGGTTTCATAGGGCCCCTGCTCCTTGGCGAGCTCA 72015 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | || ||| |||| |||||||| ||||| |||| | |||||||| || Sbjct 72014 CAGCTGGCTTCCAAGGCCCCGTAATAGATGGTCTCAAAGATCTGCTGGTTGAGCTGCTGT 71955 Query 213261 GCCTCTGGGGACGTGAAGGG-CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 |||| ||| | ||||| ||| |||| | ||| | || ||||| ||||| || Sbjct 71954 GCCTGGGGGCTCTCAAAGGGATATC-TCATCAGGATGAAGGCGTCTGCCAGGCCCTGCAC 71896 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 ||||| |||||||| | || | | |||| || Sbjct 71895 GCCGATCCCGATGGGGCGATGGCGCCGGTTGGA 71863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 ||| |||||||| |||||||| ||||| | | ||||| || ||||| | | ||| | Sbjct 77261 GTTGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGTCCGCTGCCATCTTCAGGATGGT 77202 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| ||||||||| |||||| ||| | || |||||||| |||| ||| Sbjct 77201 CT-TCTGGGAGATCTCCCACACTGTCTTGTAGAGCTGCTTCAGGTCCTCAGGGATCTCGG 77143 Query 212815 GGATGTTCT 212823 ||||||||| Sbjct 77142 GGATGTTCT 77134 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 214185 CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATA 214244 || ||||||||||||||| | ||| | |||||| ||||||||| ||| ||| | | Sbjct 58547 CTGGAGAGCTGGGGCCTGTTGGTGCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 58488 Query 214245 AACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATC 214304 || | | ||| ||||| |||||||||| | | | | ||||||| |||||||| Sbjct 58487 CACCTCTCAGACAGGAGGTTGTAGGTCTCGATGGCGGCCTCGATGTCGGTTCTGTGGATC 58428 Query 214305 TGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTC 214342 | || ||||||||||||||||||||| | ||| Sbjct 58427 CCCACGGCCACCCTCATCAGCATGTGCTGGGGACGCTC 58390 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| | |||||| || || || | ||| || || ||| |||||||||| ||| | Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || | || || || |||||||||||| |||||| ||| Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAGTGCCAGGGC 66327 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| ||||||||||| || || || |||| Sbjct 66326 TCCAGATAGATGGCAAAAGCTCCAGGTCTCT 66296 >seq3230 Length=1922383 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| ||||| ||||| ||||| || | | ||||| || ||| Sbjct 1248976 AGGACTTTCTGCTTGAGCTGGGCGACCTGCTCCCGGAGCAGGCTGGCGGTGGAGGCCAGC 1248917 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | |||||| |||||||| || |||| || | ||| | |||||| Sbjct 1248916 TCCGTGTTCTGACTCTTGAGACTTTTCACTTTTTCTTCCAAACGAGAGATCCTTTCCAGC 1248857 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | ||| ||||| | || || | || |||| | | ||| |||||||||||| Sbjct 1248856 TTCCTCTTGCGACATTTAGAAGCGGCGATCCGATTCCTCAAACGCTTGCGTTCCGCCTTG 1248797 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || ||||| ||||||||||| || || Sbjct 1248796 ATACGCTCCTGCGTGTCCATGTCGATGGGGGA 1248765 >seq25906 Length=586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || ||| || || |||||||| ||||| | ||| | ||| ||||||||||| || Sbjct 425 TACCTGAAACTCTCCTGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAAT 366 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||||| ||||| ||||| |||||| ||||| |||||||| | || || || Sbjct 365 GGATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCTGTTGGCATGGGGGACAGGAGAAG 306 Query 213035 ACTGTTCCTCACTCC 213049 |||||||| || || Sbjct 305 GCTGTTCCTGACCCC 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930895445258240