Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq332 167 3e-35
seq2120 116 5e-20
seq1398 111 2e-18
seq797 93.3 5e-13
seq22251 86.0 8e-11
>seq332
Length=2130183
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | ||
Sbjct 359709 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 359650
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||| | ||||||| |||| |
Sbjct 359649 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGACGCCTCCCCGGCGATGCGCTCGAAGA 359590
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||||| || |||||||||| ||||||||
Sbjct 359589 TGTCGTTGACGAAGGAGTTCATGATGCCCATCGCTTTCGAGGAGATGCCCGTGTCGGGGT 359530
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 359529 GCACCTGCTTCAGCACCTTGTA 359508
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | ||
Sbjct 264580 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 264639
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 264640 TAGTAGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGA 264699
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct 264700 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGT 264759
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 264760 GCACCTGCTTCAGCACCTTGTA 264781
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | ||
Sbjct 286210 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 286151
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 286150 TAGTAGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGA 286091
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | ||| ||||||||| ||||||||
Sbjct 286090 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGT 286031
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| | |||||||||
Sbjct 286030 GCACCTGCTTCAACACCTTGTA 286009
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| | ||| ||| ||| ||||| || ||||||||||| |||| | ||
Sbjct 304177 GCTTGGCCAGCGCACCGGGCAGCCGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 304118
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| |
Sbjct 304117 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 304058
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||
Sbjct 304057 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCCGTATCGGGGT 303998
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 303997 GCACCTGCTTCAGCACCTTGTA 303976
>seq2120
Length=20421
Score = 116 bits (128), Expect = 5e-20
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||||||| ||| ||| | ||| |||||||| ||||||||||| || | | ||
Sbjct 11155 GCTTGGCCAGTTCCCCGGGCAGCAGCAGCCGCACGGCAGTCTGGATCTCCCGGGAGGTGA 11096
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| ||||| |||| |||| || || || | | ||||| |||| |
Sbjct 11095 TGGTGGAGCGTTTGTTGTAGTGAGCCAAGCGCGAAGCTTCCCCGGCAATGCGCTCGAAAA 11036
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||| || |||||| |
Sbjct 11035 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATACCGGTGTCGGGAT 10976
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| || || || ||
Sbjct 10975 GCACCTGCTTCAGGACTTTATA 10954
>seq1398
Length=23311805
Score = 111 bits (122), Expect = 2e-18
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||| || || ||||||||||| || | | ||
Sbjct 8347511 GCTTGGCCAGCTCCCCGGGGAGCAGCAGGCGTACAGCTGTCTGGATCTCCCGGGAGGTGA 8347452
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || ||||| ||| ||| || | || || || | |
Sbjct 8347451 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGA 8347392
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| || ||||| ||| ||||
Sbjct 8347391 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAAATGCCGGTGTCAGGGT 8347332
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| ||||| |||||||
Sbjct 8347331 GGACCTGCTTCAGCACTTTGTAGA 8347308
>seq797
Length=179301
Score = 93.3 bits (102), Expect = 5e-13
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| |
Sbjct 59912 CGGCGAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCAT 59853
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATG 1630263
|||| |||||||| ||| ||||||||
Sbjct 59852 AGATCCCCTCGATGCTGTCATCCTTCATG 59824
>seq22251
Length=476
Score = 86.0 bits (94), Expect = 8e-11
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| ||||| ||||||||||| |||| ||| | |||||| |||||
Sbjct 241 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGTGACAC 300
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| || ||| ||| | ||||| |||| ||||||||| ||||||||
Sbjct 301 CATGACCTCCCGGGGACACCTCATGGCCATCACCCGCCACGGCGTCAACCGC 352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102647307511312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |