Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq332 167 3e-35 seq2120 116 5e-20 seq1398 111 2e-18 seq797 93.3 5e-13 seq22251 86.0 8e-11 >seq332 Length=2130183 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | || Sbjct 359709 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 359650 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||| | ||||||| |||| | Sbjct 359649 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGACGCCTCCCCGGCGATGCGCTCGAAGA 359590 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||||| || |||||||||| |||||||| Sbjct 359589 TGTCGTTGACGAAGGAGTTCATGATGCCCATCGCTTTCGAGGAGATGCCCGTGTCGGGGT 359530 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 359529 GCACCTGCTTCAGCACCTTGTA 359508 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | || Sbjct 264580 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 264639 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 264640 TAGTAGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGA 264699 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 264700 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGT 264759 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 264760 GCACCTGCTTCAGCACCTTGTA 264781 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| ||||| || ||||||||||| |||| | || Sbjct 286210 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 286151 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 286150 TAGTAGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGA 286091 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 286090 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGT 286031 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||||||||| Sbjct 286030 GCACCTGCTTCAACACCTTGTA 286009 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| | ||| ||| ||| ||||| || ||||||||||| |||| | || Sbjct 304177 GCTTGGCCAGCGCACCGGGCAGCCGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGA 304118 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 304117 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 304058 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||||||| Sbjct 304057 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCCGTATCGGGGT 303998 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 303997 GCACCTGCTTCAGCACCTTGTA 303976 >seq2120 Length=20421 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| |||||||| ||||||||||| || | | || Sbjct 11155 GCTTGGCCAGTTCCCCGGGCAGCAGCAGCCGCACGGCAGTCTGGATCTCCCGGGAGGTGA 11096 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| |||| || || || | | ||||| |||| | Sbjct 11095 TGGTGGAGCGTTTGTTGTAGTGAGCCAAGCGCGAAGCTTCCCCGGCAATGCGCTCGAAAA 11036 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||| || |||||| | Sbjct 11035 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATACCGGTGTCGGGAT 10976 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || || || || Sbjct 10975 GCACCTGCTTCAGGACTTTATA 10954 >seq1398 Length=23311805 Score = 111 bits (122), Expect = 2e-18 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||| || || ||||||||||| || | | || Sbjct 8347511 GCTTGGCCAGCTCCCCGGGGAGCAGCAGGCGTACAGCTGTCTGGATCTCCCGGGAGGTGA 8347452 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || | || || || | | Sbjct 8347451 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGA 8347392 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| || ||||| ||| |||| Sbjct 8347391 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAAATGCCGGTGTCAGGGT 8347332 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 8347331 GGACCTGCTTCAGCACTTTGTAGA 8347308 >seq797 Length=179301 Score = 93.3 bits (102), Expect = 5e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| | Sbjct 59912 CGGCGAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCAT 59853 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATG 1630263 |||| |||||||| ||| |||||||| Sbjct 59852 AGATCCCCTCGATGCTGTCATCCTTCATG 59824 >seq22251 Length=476 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||| ||| | |||||| ||||| Sbjct 241 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGTGACAC 300 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || ||| ||| | ||||| |||| ||||||||| |||||||| Sbjct 301 CATGACCTCCCGGGGACACCTCATGGCCATCACCCGCCACGGCGTCAACCGC 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102647307511312