Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq332 210 3e-48 seq2120 174 2e-37 seq1398 168 1e-35 seq325 96.9 5e-14 >seq332 Length=2130183 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 264541 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCA 264600 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| || | | ||| || ||||||||| | Sbjct 264601 GCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGATAGTAGAGCGCTTGTTGTAGT 264660 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 264661 GCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 264720 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| |||||||||||||||||| |||||||||| Sbjct 264721 TGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 264780 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 264781 ACACGTAGATCGAGTA 264796 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 286249 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCA 286190 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| || | | ||| || ||||||||| | Sbjct 286189 GCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGATAGTAGAGCGCTTGTTGTAGT 286130 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 286129 GCGCCAGGCGAGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 286070 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| |||||||||||||||||| | |||||||| Sbjct 286069 TGATGCCCATGGCCTTCGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAACACCTTGT 286010 Query 1485710 AAAC 1485713 | || Sbjct 286009 ACAC 286006 Score = 197 bits (218), Expect = 2e-44 Identities = 196/254 (77%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| |||||||| ||||| ||||| |||||| ||||||| | ||| ||| Sbjct 304214 TATTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCGCACCGGGCAGC 304155 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 ||| ||||| || ||||||||||| || | | ||| ||| ||||||||| | | Sbjct 304154 CGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGA 304095 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| |||||| | ||||||| |||| |||||||||||||| ||||||||| Sbjct 304094 GCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCATG 304035 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 304034 ATGCCCATGGCCTTGGATGAGATGCCCGTATCGGGGTGCACCTGCTTCAGCACCTTGTAC 303975 Query 1485712 ACAAAGGACGAGTA 1485725 || || |||||| Sbjct 303974 ACGTAGATCGAGTA 303961 Score = 187 bits (206), Expect = 4e-41 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 1485493 CCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGG 1485552 ||| | ||||| |||||| ||||||| |||||| ||| | ||| ||||| || |||||| Sbjct 359725 CCCGCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACTGCCGTCTGG 359666 Query 1485553 ATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTG 1485612 ||||| || | | ||| ||| ||||||||| | |||||||||| ||||| | Sbjct 359665 ATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGACGCCTCCCCG 359606 Query 1485613 CCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAG 1485672 ||||||| |||| ||||||||||| || ||||||||||| ||||| ||| |||| Sbjct 359605 GCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATCGCTTTCGAGGAG 359546 Query 1485673 ATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||| |||||||||||||||||| ||||||||||| || || |||||| Sbjct 359545 ATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 359493 Score = 109 bits (120), Expect = 9e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| ||||| ||| Sbjct 368129 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACTGCGTGCTTGGCCAGCTCGCCCGGCA 368070 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTG 1485582 | ||| ||||| || ||||||||||| || | | |||| ||| ||||||| Sbjct 368069 GCAGCAGCCGCACTGCCGTCTGGATCTCCCGCGAGGCGATGGTGGAGCGCTTG 368017 Score = 102 bits (112), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 359812 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCA 359753 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| ||||| || ||||||||||| || Sbjct 359752 GCAGCAGCCGCACCGCCGTCTGGATCTCCCG 359722 >seq2120 Length=20421 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||| ||||| ||||| |||||||||||| |||||||||| ||| ||| Sbjct 11194 TGTACTTCGTGACGGCTTTGGTGCCCTCCGAGACGGCGTGCTTGGCCAGTTCCCCGGGCA 11135 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| |||| | ||| ||| ||| ||||| | Sbjct 11134 GCAGCAGCCGCACGGCAGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGTTTGTTGTAGT 11075 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | ||||| |||| ||||||||||| || ||||||| Sbjct 11074 GAGCCAAGCGCGAAGCTTCCCCGGCAATGCGCTCGAAAATGTCGTTGACGAAGGAGTTCA 11015 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| || |||||| ||||||||||| || || || | Sbjct 11014 TGATGCCCATGGCCTTGGAAGAGATACCGGTGTCGGGATGCACCTGCTTCAGGACTTTAT 10955 Query 1485710 AAAC 1485713 |||| Sbjct 10954 AAAC 10951 >seq1398 Length=23311805 Score = 168 bits (186), Expect = 1e-35 Identities = 191/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| |||||| ||||||| || ||| | | Sbjct 8347550 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACAGCGTGCTTGGCCAGCTCCCCGGGGA 8347491 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || ||||||||||| |||| | ||| ||| ||||||||| Sbjct 8347490 GCAGCAGGCGTACAGCTGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 8347431 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | || || || | ||||||||||| || ||||||| Sbjct 8347430 GGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGATGTCGTTGACGAAGGAGTTCA 8347371 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || ||||| ||| ||||| |||||||| ||||| |||| Sbjct 8347370 TGATGCCCATGGCCTTGGAAGAAATGCCGGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 8347311 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 8347310 AGACATAGATGGAGTA 8347295 >seq325 Length=5823465 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| ||||| ||||| |||||||||| ||| || || Sbjct 5215042 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTGCCAGATGTCGTGA 5215101 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | |||||||| ||| || || |||||||||||||| Sbjct 5215102 TACTGGATGGGGAAGATGACAAAGCGGCGGGGATTGTCCCGTAGCAGCGGCTC 5215154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910423882029104