Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3231 116 3e-20 seq338 104 2e-16 seq2410 93.3 3e-13 >seq3231 Length=6269119 Score = 116 bits (128), Expect = 3e-20 Identities = 333/506 (66%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | ||||| || |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 5109409 GCACTGACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGACT 5109350 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| || | || ||| | ||||| || ||||| || Sbjct 5109349 CCACGGGGTGCTGGGGGGATGCCCGTTAGATCAAACTTGCCCAGTAAGTTGTTATCCTTT 5109290 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | ||||||||| | | |||| ||| | ||| | | || || ||||| | Sbjct 5109289 GTCATAGCCCTCTCACCCTCGTACACCTGGACTAGGACACTGC--TCTGGTTGTCTGAGT 5109232 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 5109231 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCA 5109173 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 5109172 GTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAGT 5109113 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 5109112 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGTATAGCTGCTTGCACAGCAGCACCG 5109053 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || |||||||| |||||||| || | | | || || | ||| |||||||| || | Sbjct 5109052 TAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 5108993 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || || | | | |||||| ||||| | || || || || | ||||| || || Sbjct 5108992 TGTAGCAGCTTTTGGATCTTAGGGATACGGGTAGAGCCCCCCACCAGCACAATCTCCTGG 5108933 Query 281903 ACCTGTGATTTATCCAGTTTTGAATC 281928 | ||| ||||| || || | ||| Sbjct 5108932 ATCTGGCCCTTATCGAGCTTGGCATC 5108907 >seq338 Length=1383603 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| |||||||| ||||| ||||| || ||||||| || Sbjct 65915 TTCTTGTCCAGACCATAAGCAATGGCAGCAGCTGTTGGCTCATTGATGATTCTCAGCACG 65856 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||||||||||||||| || || | || || || || ||||| Sbjct 65855 TTGAGCCCTGCAATGGTTCCTGCATCTTTAGTAGCCTGACGCTGGGAGTCATTGAAATAG 65796 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 65795 GCTGGCACAGTCACTACAGCAT 65774 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | ||| |||| | || || ||||||||||||| Sbjct 64971 CAAAAACTGTATTGGTTGGATTCATTGCCACTTGGTTCTTTGCAGCATCTCCAATCAACC 64912 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | || || || || || | || || |||||||| |||| Sbjct 64911 TCTCTGTGTCTGTGAAGGCGACGTAGCTGGGGGTGGTCCTGTTCCCCTGATCATTGGCAA 64852 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || || || || |||| ||| | ||||| ||||| | | || || || | ||||| Sbjct 64851 TGATCTCCACCTTCCCATGTTGGAACACACCAACACAGGAATAGGTGGTGCCAAGATCAA 64792 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 64791 TCCCGACAGC 64782 >seq2410 Length=3354484 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | || ||||| ||||| || || ||| | ||||| | | ||||| Sbjct 386674 TGTTGTGGCTACAGTGGCCTTTGGAATGGGCATCAACAAAGCAGATGTCCGGATGGTTAT 386615 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || |||||| | || ||| |||||||| |||||||| ||||| ||||| Sbjct 386614 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTATCAGGAAATTGGGAGAGCTGGTCG 386555 Query 131296 TGATGG 131301 ||||| Sbjct 386554 GGATGG 386549 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | || ||||| ||||| || || ||| | ||||| | | ||||| Sbjct 391424 TGTTGTGGCTACAGTGGCCTTTGGAATGGGCATCAACAAAGCAGATGTCCGGATGGTTAT 391365 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || |||||| | || ||| |||||||| |||||||| ||||| ||||| Sbjct 391364 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTATCAGGAAATTGGGAGAGCTGGTCG 391305 Query 131296 TGATGG 131301 ||||| Sbjct 391304 GGATGG 391299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737943093714336