Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq3766 107 3e-18
seq324 107 3e-18
seq3040 104 3e-17
seq3244 82.4 1e-10
>seq3766
Length=1248695
Score = 107 bits (118), Expect = 3e-18
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 229933 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 229874
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 229873 CCCGACGGGGAG 229862
Score = 104 bits (114), Expect = 3e-17
Identities = 71/79 (90%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 229933 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 229874
Query 11789 CCCGACGAGGAGGGAGGTT 11807
||||||| ||||| || ||
Sbjct 229873 CCCGACGGGGAGGCAGCTT 229855
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 229862 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 229921
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 229922 TACTAACGAGGA 229933
>seq324
Length=3932543
Score = 107 bits (118), Expect = 3e-18
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct 114345 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 114404
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 114405 CCCGACGGGGAG 114416
Score = 105 bits (116), Expect = 9e-18
Identities = 77/88 (88%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|| |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 114341 CCTGTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 114400
Query 11785 ATTCCCCGACGAGGAGGGAGGTTAACGC 11812
||||||||||| ||||||||| |||
Sbjct 114401 ATTCCCCGACG----GGGAGGTTACCGC 114424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| |||||||||
Sbjct 114416 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 114357
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 114356 TACTAACGAGGA 114345
>seq3040
Length=2681776
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2677492 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2677433
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2677432 CCCGACGGGGAG 2677421
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 2677492 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2677433
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 2677432 CCCGACGGGGAGG 2677420
Score = 96.9 bits (106), Expect = 5e-15
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409
|| |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||
Sbjct 2677418 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 2677477
Query 139410 CTATACTAACGAGGATTTTGGTACACG 139436
||||||||||||||| | |||||||
Sbjct 2677478 CTATACTAACGAGGAGCT--GTACACG 2677502
>seq3244
Length=590067
Score = 82.4 bits (90), Expect = 1e-10
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 8666 AGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGA 8725
||||||||||||||||| ||| || || | |||||||||||||||||||||||||||
Sbjct 516651 AGTATAGTGGTTAGTATCCCCACCTCTCACGTGGGAGACCGGGGTTCGATTCCCCGACGG 516710
Query 8726 GGAGC 8730
|||||
Sbjct 516711 GGAGC 516715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652398123587840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |