Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1844 134 1e-26 seq324 118 1e-21 >seq1844 Length=2686333 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||||||||| || ||||| ||| | ||| | || || ||||| Sbjct 2460502 ATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTG 2460443 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 2460442 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 2460383 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || |||| ||||| ||||||||| || Sbjct 2460382 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGCCAGT 2460323 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 2460322 CAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| | ||| | ||| || ||||| Sbjct 2460730 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTG 2460671 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| || || |||||||| ||||| |||||| Sbjct 2460670 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTT 2460611 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || |||| ||||| |||||| || || Sbjct 2460610 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTCCCAGT 2460551 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 2460550 CAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||||||| | || ||||| ||| | ||| | ||| || ||||| Sbjct 2460046 ATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTG 2459987 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| || || |||||||||||||| |||||| Sbjct 2459986 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 2459927 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | ||||| ||||| ||||||| || || | ||| | ||| ||||| || Sbjct 2459926 GGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTTATGGTCTTGCCAGT 2459867 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 2459866 CAGGGTCTTCACAAAGATCTGCAT 2459843 >seq324 Length=3932543 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | || || ||||| Sbjct 119186 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 119127 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||||||||| || ||||| |||||||| |||||| Sbjct 119126 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 119067 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 119066 GGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCTGT 119007 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||||||| Sbjct 119006 CAAGGTCTTGACAAAGATCTGCATG 118982 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || ||| | | | || || ||||||||||| Sbjct 118723 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 118665 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||||||| || ||||| |||||||| |||||| ||| Sbjct 118664 AGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 118605 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| ||||||| || || | |||| ||| ||||| ||||| || Sbjct 118604 GACATTTTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATGGTCTTGCCTGTCAGGGT 118545 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 118544 CTTCACGAAGATCTGCAT 118527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 118951 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 118892 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || |||||||| || || |||||| ||| Sbjct 118891 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTATCCTGGATCTTGGCTTTG 118832 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| ||||||| || || | ||||| ||| ||||| |||| || Sbjct 118831 ACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 118772 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 118771 TTCACAAAGATCTGCATG 118754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483090043488640