Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq766 185 1e-41 seq618 86.0 7e-12 >seq766 Length=6580670 Score = 185 bits (204), Expect = 1e-41 Identities = 582/896 (65%), Gaps = 8/896 (1%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || ||| || || || || || || || || || || ||||| Sbjct 3451607 ATCCAGTTCAGGTCTCCTACTCCAAAAACACAAACAGAGCGAACATGAACTCCACTGCAT 3451548 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | |||||| || || |||| |||||||| || || ||| Sbjct 3451547 GGTGGGTAGGGTGCACCTTTAGACACATCACCTTCAAAGTACTGCCACTTGACAAATCTA 3451488 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||| ||||| | |||| || | || |||||||| || Sbjct 3451487 GCCAGTGCATTCATGTCAGAAACGTCATACTTCT-CACTAGAAGAAACTGCTCCAGGCAC 3451429 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| |||| || ||||| ||||| || || || | Sbjct 3451428 TTCAGGGATTCTCTGAATTGTTGCCCATAGGTACTCATCTGGGCTATAAGTGTCTTTTGC 3451369 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGT 162458 |||||| ||||||| | | | | | | | || ||||| || | ||| | Sbjct 3451368 CCACTCAATGAACTTCAGTATCTTGCTGTTTTCTAATATGTATTCAACAAATCTTCTGCT 3451309 Query 162459 CACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTC 162518 || | ||| || || ||||| ||||| | || ||| | ||| || ||| |||||| Sbjct 3451308 AACTACAAAATAGGCACTACCGGAAAAAATTGGAGTGCTGAGAGGTGGTAGCTGTTTGTC 3451249 Query 162519 TTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCAT 162578 | || ||||| || | || || | | | | || || ||||||| | Sbjct 3451248 TATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTC 3451189 Query 162579 CTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTG 162638 ||| | || | | ||| || || || ||||| ||| | |||||||| | Sbjct 3451188 TTTATAAGCAGGCATTTTTTCTGTTTCCAGGCTGTTTTCGCCCTTAAGGGCCTTCAATTT 3451129 Query 162639 ACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATA 162698 || || || | |||||||| | || ||||| |||| || || || || | || Sbjct 3451128 CTCTACTATTTCCTGGTTGGTCTTTATAGGGAAGTCCATGCCACAAAGGTTGATTAGGTA 3451069 Query 162699 TTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||||| || || || ||| ||||| | | ||| || | ||| ||||| || | Sbjct 3451068 TTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATACAATTAATATCTGCCTGCACCCT 3451009 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||||| || || ||||| || ||||| ||| | ||| | ||||||||| || ||||| Sbjct 3451008 GCTCCAAGAAGCATACACAACACTCTCTAACTGACTGGAAATAAAGACATTATCAAAACA 3450949 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTG 162875 || ||||| || |||| || || |||| | || || ||| | || || || Sbjct 3450948 TGAGACTATTCCTTTCACAGC-AGCAAGAAAAGACTCTGGAGACTTTT--TGTCAACATG 3450892 Query 162876 TACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTAT 162935 | |||||| | |||||||||||| || || | || || | ||| |||| |||||| || Sbjct 3450891 AATGCAGTAAAAATTCTGAGGGGCATATATTGATCTTAGAAGTCTATCGAGCATCTCAAT 3450832 Query 162936 CTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGA 162995 || || | ||||| || || || || || || || || || || || ||||| || Sbjct 3450831 TTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGGGA 3450772 Query 162996 CCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 | ||| ||| || | | || || | |||||||| | |||||||||| Sbjct 3450771 TTCCATAATGTATTTCCTAGTCTTCGTGAAGGAGGCACAGTCTGCTGTCATGTTAA 3450716 >seq618 Length=1768260 Score = 86.0 bits (94), Expect = 7e-12 Identities = 176/262 (67%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 |||| ||||| | ||||| || || || || | || ||| || || || || || Sbjct 1440199 ACAGGTCCTGCATGCAGTTGAGGTCAGCTTGCAGTCGGGACCAGGAGGCATAGACCACTT 1440258 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 | |||| | |||| ||||| |||||| ||| || | || || || |||| ||| Sbjct 1440259 TTTCCAGGCGGCTGGCCACAAAAACATTGGGGAAGCAGGCCACAATGGCCCTCACAGCCT 1440318 Query 162842 GTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGT 162901 ||| | | | || | || | ||| || ||||| | ||||| |||| || Sbjct 1440319 TCTGGAAGGTAGACGGAGACTTGTTGTCAATGTGGACACAGTAGATGTTCTGTGGGGTGT 1440378 Query 162902 AGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACG 162961 |||||| || ||| | | |||||||||||| ||||| | ||| | || || || || | Sbjct 1440379 AGATGGACCGCAGGAGACGCTCGAACATCTCAATCTTGTTGTGGATGACCATGGAGTAGG 1440438 Query 162962 CTATGGGGAACTCAGCCTCCTC 162983 | ||||||||||| ||||| || Sbjct 1440439 CGATGGGGAACTCTGCCTCTTC 1440460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578036236825600