Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2411 118 3e-23 seq1387 98.7 3e-17 seq942 98.7 3e-17 seq3042 96.9 1e-16 >seq2411 Length=876673 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 41729 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 41670 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 41669 CCCGGGCTTCAGC 41657 Score = 84.2 bits (92), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||| ||||||||||| ||||| | | | ||||||||||||||||||| |||||||||| Sbjct 26914 GGCTAAAGTAGCTCAGATGGGACAACGTGAGACTGAAGATCTAAAGGT-CCTGGTTCAAT 26972 Query 2828 CCCGGGCTTCAGC 2840 | | ||||||||| Sbjct 26973 CTCAGGCTTCAGC 26985 >seq1387 Length=464301 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 260383 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 260324 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 260323 CCGGGTTTCGGC 260312 >seq942 Length=2614670 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1375856 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1375797 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1375796 CCGGGTTTCGGC 1375785 >seq3042 Length=1140521 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 300096 GGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 300155 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 300156 CCCGGGTTTCGGC 300168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15840111240720