Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq332 185 1e-40 seq2120 143 4e-28 seq1398 131 2e-24 seq797 93.3 6e-13 seq325 86.0 9e-11 >seq332 Length=2130183 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 264781 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCGAAGGCCATG 264728 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| |||| Sbjct 264727 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCTCGC 264668 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| || ||||| Sbjct 264667 CTGGCGCACTACAACAAGCGCTCTACTATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 264608 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 264607 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 264559 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | ||||||||||||||| || || |||| || ||| ||||| Sbjct 286009 TACAAGGTGTTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCGAAGGCCATG 286062 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| |||| Sbjct 286063 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCTCGC 286122 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| || ||||| Sbjct 286123 CTGGCGCACTACAACAAGCGCTCTACTATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 286182 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 286183 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 286231 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 303976 TACAAGGTGCTGAAGCAGGTGCACCCCGATAC-----GGGCATC-TCATCCAAGGCCATG 304029 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||||| | |||||| ||| Sbjct 304030 GGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCCGC 304089 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | |||| ||||||||||| || ||||| Sbjct 304090 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 304149 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| ||| | ||||||| |||||| |||||||||||||||| Sbjct 304150 CTGCGGCTGCCCGGTGCGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 304198 Score = 167 bits (184), Expect = 3e-35 Identities = 172/224 (77%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| ||| || | ||| Sbjct 359508 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCGAAAGCGATG 359561 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| |||| Sbjct 359562 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCTCGC 359621 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| || ||||| Sbjct 359622 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 359681 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||| | ||| |||||| ||||||| |||||| ||||||| ||| Sbjct 359682 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGCGGG 359725 Score = 91.5 bits (100), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 ||||||| ||| |||| | |||| ||||||||||| || ||||| ||| | ||| || Sbjct 368017 CAAGCGCTCCACCATCGCCTCGCGGGAGATCCAGACGGCAGTGCGGCTGCTGCTGCCGGG 368076 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||||||| |||||| ||||| |||||||||| Sbjct 368077 CGAGCTGGCCAAGCACGCAGTCTCGGAGGGCACCA 368111 Score = 86.0 bits (94), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| || ||||| ||| | ||| |||||| ||||||| |||||| | Sbjct 359720 CGCGGGAGATCCAGACGGCGGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAG 359779 Query 725128 TCTCCGAGGGCACCA 725142 ||||||||||||||| Sbjct 359780 TCTCCGAGGGCACCA 359794 >seq2120 Length=20421 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || || || || ||||||||||| ||| |||| | ||| || |||| ||||| Sbjct 10954 TATAAAGTCCTGAAGCAGGTGCATCCCGACACCGGT-----ATC-TCTTCCAAGGCCATG 11007 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||| | | || || ||| Sbjct 11008 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATTGCCGGGGAAGCTTCGCGC 11067 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | || |||||| ||| ||| ||| | | || ||||||||||| |||||||| Sbjct 11068 TTGGCTCACTACAACAAACGCTCCACCATCACCTCCCGGGAGATCCAGACTGCCGTGCGG 11127 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| |||||||||||| |||||||||| Sbjct 11128 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTCTCGGAGGGCACCA 11176 >seq1398 Length=23311805 Score = 131 bits (144), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||| ||||| |||||||| ||||| |||| || | | Sbjct 8347295 TACTCCATCTATGTCTACAAAGTGCTGAAGCAGGTCCACCCTGACACCG----GCATTTC 8347350 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 | | |||| ||||| ||||||||||| || ||||||||||| | || || || | Sbjct 8347351 TTC--CAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGTATTGCT 8347408 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | |||||||||| ||| ||| | | || |||||| Sbjct 8347409 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATC 8347468 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || |||||| | | | ||| || ||||||| |||||| ||||| |||||| Sbjct 8347469 CAGACAGCTGTACGCCTGCTGCTCCCCGGGGAGCTGGCCAAGCACGCTGTCTCAGAGGGC 8347528 Query 725139 ACCA 725142 |||| Sbjct 8347529 ACCA 8347532 >seq797 Length=179301 Score = 93.3 bits (102), Expect = 6e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| |||| ||| |||| | ||||| || || ||||||||| ||||| Sbjct 68129 CAGCTCTGGTATTCCATCATCGAATCCCAGACAGAGACTGGGACTCCCTACATGCTCTAC 68188 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 ||||| || ||||| | ||||||||||||||||||||||||| | |||| ||| Sbjct 68189 AAGGATTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGAGCAGCAA 68247 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||| || ||||| Sbjct 68248 CCTCTGCACAGAAATCGT 68265 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || || ||| || |||||||| || |||||||| ||||||||||| ||||||||| Sbjct 59810 TGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGGATCTATGACACCCTCAAGCAG 59869 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | ||||| |||||||| | |||| Sbjct 59870 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTCGCCG 59912 >seq325 Length=5823465 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| || || || || |||||||||| | |||||||||| || || Sbjct 5215154 GAGCCGCTGCTACGGGACAATCCCCGCCGCTTTGTCATCTTCCCCATCCAGTATCACGAC 5215095 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 5215094 ATCTGGCAGATGTA-CAAGAAGGCTGAGGCTTCCTTCTGGACGGCGGAGGAGGT 5215042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172531812195232