Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq332 185 1e-40
seq2120 143 4e-28
seq1398 131 2e-24
seq797 93.3 6e-13
seq325 86.0 9e-11
>seq332
Length=2130183
Score = 185 bits (204), Expect = 1e-40
Identities = 179/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 264781 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCGAAGGCCATG 264728
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| ||||
Sbjct 264727 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCTCGC 264668
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| || |||||
Sbjct 264667 CTGGCGCACTACAACAAGCGCTCTACTATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 264608
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct 264607 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 264559
Score = 179 bits (198), Expect = 5e-39
Identities = 178/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||| | ||||||||||||||| || || |||| || ||| |||||
Sbjct 286009 TACAAGGTGTTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCGAAGGCCATG 286062
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| ||||
Sbjct 286063 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCTCGC 286122
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| || |||||
Sbjct 286123 CTGGCGCACTACAACAAGCGCTCTACTATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 286182
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct 286183 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 286231
Score = 176 bits (194), Expect = 6e-38
Identities = 177/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 303976 TACAAGGTGCTGAAGCAGGTGCACCCCGATAC-----GGGCATC-TCATCCAAGGCCATG 304029
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| |||||||||||||| |||| ||||||| | |||||| |||
Sbjct 304030 GGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCCGC 304089
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || |||||||||| ||| ||| | |||| ||||||||||| || |||||
Sbjct 304090 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 304149
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| ||| ||| | ||||||| |||||| ||||||||||||||||
Sbjct 304150 CTGCGGCTGCCCGGTGCGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 304198
Score = 167 bits (184), Expect = 3e-35
Identities = 172/224 (77%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| ||| || | |||
Sbjct 359508 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCGAAAGCGATG 359561
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | ||||| ||||
Sbjct 359562 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCTCGC 359621
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| | |||| ||||||||||| || |||||
Sbjct 359622 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCAGTGCGG 359681
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137
||| | ||| |||||| ||||||| |||||| ||||||| |||
Sbjct 359682 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAGTCTCCGCGGG 359725
Score = 91.5 bits (100), Expect = 2e-12
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107
||||||| ||| |||| | |||| ||||||||||| || ||||| ||| | ||| ||
Sbjct 368017 CAAGCGCTCCACCATCGCCTCGCGGGAGATCCAGACGGCAGTGCGGCTGCTGCTGCCGGG 368076
Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| ||||||| |||||| ||||| ||||||||||
Sbjct 368077 CGAGCTGGCCAAGCACGCAGTCTCGGAGGGCACCA 368111
Score = 86.0 bits (94), Expect = 9e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127
|||| ||||||||||| || ||||| ||| | ||| |||||| ||||||| |||||| |
Sbjct 359720 CGCGGGAGATCCAGACGGCGGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCAG 359779
Query 725128 TCTCCGAGGGCACCA 725142
|||||||||||||||
Sbjct 359780 TCTCCGAGGGCACCA 359794
>seq2120
Length=20421
Score = 143 bits (158), Expect = 4e-28
Identities = 170/229 (74%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
|| || || || ||||||||||| ||| |||| | ||| || |||| |||||
Sbjct 10954 TATAAAGTCCTGAAGCAGGTGCATCCCGACACCGGT-----ATC-TCTTCCAAGGCCATG 11007
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||| | | || || |||
Sbjct 11008 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATTGCCGGGGAAGCTTCGCGC 11067
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||| | || |||||| ||| ||| ||| | | || ||||||||||| ||||||||
Sbjct 11068 TTGGCTCACTACAACAAACGCTCCACCATCACCTCCCGGGAGATCCAGACTGCCGTGCGG 11127
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| |||||||||| |||||||||||| ||||||||||
Sbjct 11128 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTCTCGGAGGGCACCA 11176
>seq1398
Length=23311805
Score = 131 bits (144), Expect = 2e-24
Identities = 176/244 (72%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | ||||||| ||||| |||||||| ||||| |||| || | |
Sbjct 8347295 TACTCCATCTATGTCTACAAAGTGCTGAAGCAGGTCCACCCTGACACCG----GCATTTC 8347350
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
| | |||| ||||| ||||||||||| || ||||||||||| | || || || |
Sbjct 8347351 TTC--CAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGTATTGCT 8347408
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
|| ||| |||||||| | | |||||||||| ||| ||| | | || ||||||
Sbjct 8347409 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATC 8347468
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| || || |||||| | | | ||| || ||||||| |||||| ||||| ||||||
Sbjct 8347469 CAGACAGCTGTACGCCTGCTGCTCCCCGGGGAGCTGGCCAAGCACGCTGTCTCAGAGGGC 8347528
Query 725139 ACCA 725142
||||
Sbjct 8347529 ACCA 8347532
>seq797
Length=179301
Score = 93.3 bits (102), Expect = 6e-13
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| |||| ||| |||| | ||||| || || ||||||||| |||||
Sbjct 68129 CAGCTCTGGTATTCCATCATCGAATCCCAGACAGAGACTGGGACTCCCTACATGCTCTAC 68188
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209
||||| || ||||| | ||||||||||||||||||||||||| | |||| |||
Sbjct 68189 AAGGATTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGAGCAGCAA 68247
Query 262210 CCTGTGCACCGAGATCGT 262227
||| ||||| || |||||
Sbjct 68248 CCTCTGCACAGAAATCGT 68265
Score = 91.5 bits (100), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029
|| || ||| || |||||||| || |||||||| ||||||||||| |||||||||
Sbjct 59810 TGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGGATCTATGACACCCTCAAGCAG 59869
Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
|| || |||||||||||| | ||||| |||||||| | ||||
Sbjct 59870 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTCGCCG 59912
>seq325
Length=5823465
Score = 86.0 bits (94), Expect = 9e-11
Identities = 88/114 (77%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||||||||| || || || || |||||||||| | |||||||||| || ||
Sbjct 5215154 GAGCCGCTGCTACGGGACAATCCCCGCCGCTTTGTCATCTTCCCCATCCAGTATCACGAC 5215095
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||| ||||| ||||| ||||| || ||||||||
Sbjct 5215094 ATCTGGCAGATGTA-CAAGAAGGCTGAGGCTTCCTTCTGGACGGCGGAGGAGGT 5215042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7172531812195232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |