Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3828 123 3e-23
seq325 123 3e-23
>seq3828
Length=4044606
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||||||||| |||||||| || || || |||||||||||||| || || ||||| |
Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 1121824 CAACCACTCTCTCACC 1121839
Score = 87.8 bits (96), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
||| ||||| | |||| |||||||| |||||||||||||| || ||||||||||||| |
Sbjct 1128593 AAAGCTTTCTCACCAAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAA 1128652
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089
| || ||||| ||||||||||| | | ||| || |||||
Sbjct 1128653 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCA 1128695
>seq325
Length=5823465
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | ||| |||||||| || ||||||||||| | || | || |
Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || |||||
Sbjct 5212252 CTACTACTCGTTCTCC 5212267
Score = 96.9 bits (106), Expect = 5e-15
Identities = 82/100 (82%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 39306 CTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTT 39365
|||| ||||| |||||||| | || |||||||| || | |||||| || ||||| ||||
Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932
Query 39366 TGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||||||| || || ||||||||||| ||||| |||||
Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||| | || || || || | ||||| |||||||||||||| |||||||| || ||
Sbjct 5214170 ATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 5214229
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
||||| || || || ||||| | ||||| || | |||||| ||| || ||||| ||
Sbjct 5214230 AATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTAAATCGCTC 5214289
Query 39997 CGCC 40000
| ||
Sbjct 5214290 CACC 5214293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686438816999040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |