Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3828 123 3e-23 seq325 123 3e-23 >seq3828 Length=4044606 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 1121704 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1121763 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||||||||| |||||||| || || || |||||||||||||| || || ||||| | Sbjct 1121764 TCAACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGG 1121823 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 1121824 CAACCACTCTCTCACC 1121839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| ||||| | |||| |||||||| |||||||||||||| || ||||||||||||| | Sbjct 1128593 AAAGCTTTCTCACCAAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAA 1128652 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 | || ||||| ||||||||||| | | ||| || ||||| Sbjct 1128653 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCA 1128695 >seq325 Length=5823465 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| || ||||||||||| | || | || | Sbjct 5212132 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCT 5212191 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 5212192 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5212251 Query 39759 CAACAAGTCTCTCTCC 39774 | || | || ||||| Sbjct 5212252 CTACTACTCGTTCTCC 5212267 Score = 96.9 bits (106), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 39306 CTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTT 39365 |||| ||||| |||||||| | || |||||||| || | |||||| || ||||| |||| Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932 Query 39366 TGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||||||| || || ||||||||||| ||||| ||||| Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | || || || || | ||||| |||||||||||||| |||||||| || || Sbjct 5214170 ATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 5214229 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||| || || || ||||| | ||||| || | |||||| ||| || ||||| || Sbjct 5214230 AATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTAAATCGCTC 5214289 Query 39997 CGCC 40000 | || Sbjct 5214290 CACC 5214293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686438816999040