Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq325 114 1e-20
seq3828 95.1 1e-14
>seq325
Length=5823465
Score = 114 bits (126), Expect = 1e-20
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||
Sbjct 5214277 CAAGAAGTACAAGTCACAGAAGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 5214218
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||||||||||
Sbjct 5214217 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATCAAAGAT 5214170
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
||||||||| | || || ||||||| |||||||| || |||||||| || || |||||
Sbjct 5212267 GGAGAACGAGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 5212208
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| || |||||| | |||||| |||| ||||||||||| |||| ||||| ||||| |
Sbjct 5212207 TCAATTTTTTGGCTGAAGAAAAGAGGATTGATGCCTGGACTGACTTTTTCTAATGAACTC 5212148
Query 44243 ATAAGTCGTGATGA 44256
|| ||| | |||||
Sbjct 5212147 ATCAGTAGAGATGA 5212134
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554
|| || ||||| || |||||||| || || ||||||||||||| || || ||||| |||
Sbjct 5210972 AATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAAACCAATTTCTTTGAGAAA 5210913
Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
| || || ||||||||| | ||||| ||||||
Sbjct 5210912 AGAGTAGGTGAATATCAGAGGATGGGAGTCATG 5210880
>seq3828
Length=4044606
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194
|| || ||||| | ||| |||||||| ||||| ||||| || ||||| || |||||||||
Sbjct 1121827 GTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCAGGTTCCTTTGCTGCTATATTTTGG 1121768
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
|| ||||| |||| |||||||||| |||| || || ||||| | || || | |||
Sbjct 1121767 TTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1121708
Query 44255 GA 44256
||
Sbjct 1121707 GA 1121706
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/136 (74%), Gaps = 3/136 (2%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| |
Sbjct 1116739 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 1116680
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609
| || ||| |||||||||||| | | || ||| ||| | |||||| || |
Sbjct 1116679 AGCGAGTTTCAGAATATCAGCGTTTTGCTGTTATGGCAGAAACCATGGACAATGTCTTCA 1116620
Query 44610 CTACGGATGAAGATTT 44625
|| ||||| ||||||
Sbjct 1116619 CTCTGGATGCAGATTT 1116604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397190859089680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |