Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq325 114 1e-20 seq3828 95.1 1e-14 >seq325 Length=5823465 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 5214277 CAAGAAGTACAAGTCACAGAAGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 5214218 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || |||||||||||| Sbjct 5214217 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATCAAAGAT 5214170 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||||||| | || || ||||||| |||||||| || |||||||| || || ||||| Sbjct 5212267 GGAGAACGAGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 5212208 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| ||||||||||| |||| ||||| ||||| | Sbjct 5212207 TCAATTTTTTGGCTGAAGAAAAGAGGATTGATGCCTGGACTGACTTTTTCTAATGAACTC 5212148 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 5212147 ATCAGTAGAGATGA 5212134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| || |||||||| || || ||||||||||||| || || ||||| ||| Sbjct 5210972 AATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAAACCAATTTCTTTGAGAAA 5210913 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || || ||||||||| | ||||| |||||| Sbjct 5210912 AGAGTAGGTGAATATCAGAGGATGGGAGTCATG 5210880 >seq3828 Length=4044606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| |||||||| ||||| ||||| || ||||| || ||||||||| Sbjct 1121827 GTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCAGGTTCCTTTGCTGCTATATTTTGG 1121768 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 || ||||| |||| |||||||||| |||| || || ||||| | || || | ||| Sbjct 1121767 TTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1121708 Query 44255 GA 44256 || Sbjct 1121707 GA 1121706 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 1116739 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 1116680 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||||||||| | | || ||| ||| | |||||| || | Sbjct 1116679 AGCGAGTTTCAGAATATCAGCGTTTTGCTGTTATGGCAGAAACCATGGACAATGTCTTCA 1116620 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 1116619 CTCTGGATGCAGATTT 1116604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397190859089680