Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3828 104 3e-17 seq54735 95.1 1e-14 seq25906 86.0 7e-12 seq765 86.0 7e-12 seq797 82.4 8e-11 >seq3828 Length=4044606 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 1121706 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1121765 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 |||||||| || ||| |||||||| ||||||||||||||| ||| |||||||| Sbjct 1121766 AACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCA 1121825 Query 74892 AC 74893 || Sbjct 1121826 AC 1121827 >seq54735 Length=6391118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 2285201 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTCCCACCATGAAGCCTGGTACCAAACTGA 2285260 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| ||| |||||||| ||||||||||||||| Sbjct 2285261 CCAATTGGTTGTAGCAGATTAACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 2285320 Query 117425 ATCGT 117429 ||||| Sbjct 2285321 ATCGT 2285325 >seq25906 Length=586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| || | || |||||||| || || || ||||||||| ||||||||||||| | Sbjct 305 CCTTCTCCTGTCCCCCATGCCAACAGCTTCCACTGCTCAGATCCTGGGCAACAACGAATC 364 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 | ||||| ||||| | |||||||||| ||| || ||| |||| |||||| Sbjct 365 CATTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCAGGAGAGTTT 419 >seq765 Length=2861777 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||| | || |||||||| Sbjct 892251 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGTCTTGTGCCAAACTGA 892310 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | |||||||||||| ||||||||| ||||||||||| || | | Sbjct 892311 CCAATAGGCTGTAGCAAGTTGAGGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTAATA 892370 Query 152149 ATCGT 152153 || || Sbjct 892371 ATAGT 892375 >seq797 Length=179301 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| || ||||| || || |||||| Sbjct 59807 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGGATCTATGACACCCTCAAG 59866 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||||| | || || ||||| Sbjct 59867 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 59904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546841594812800